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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaattctacatatacacatgcgtacgtatattgaaacaggatttaatgtgaataaaatttcttaacaacattgttaatataaatatgtacctttttctagctaattatctcttcaaaattttgttaaatgttatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08930.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059161|gb|DR354918.1|DR354918
EST:     CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG                         TCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTC
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTC
EST: gi|125183962|gb|EL198916.1|EL198916
EST:     CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG                         TCGTTTGGCATTCTTCCAGAACTACACTCCCATCTTCACTTGCATCGGC
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACT-CACTCCCATCTTCACTTGCATCGGC
EST: gi|124834452|gb|EH918891.1|EH918891
EST:     CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG                         TCGTTTGGCATTCTTCCAGAACTCACT
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACT
EST: gi|124835485|gb|EH919924.1|EH919924
EST:     CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG                         TCGTTTGGCATTCTTCCAGAA
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAA
EST: gi|125123414|gb|EL169863.1|EL169863
EST:     CTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG                         TCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTC
genomic: CTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTC
EST: gi|124781912|gb|EH871855.1|EH871855
EST:     CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAG                         TCGTTTGGCATTCTTCCAGAACTCACTCCCAT
genomic: CTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACGGTTTCCAGgtaattttaa ... tgttatgcagTCGTTTGGCATTCTTCCAGAACTCACTCCCAT