Sequence
atgc intronic sequence ATGC exonic sequenceGTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G07110.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatgg-ctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgct-actttatatatgtttacttgtgcaatcttaaa--------------------------
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 15
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacg-tctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtc--ttaat-cacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgaacataatta---ttttggatagttcatt-atctagttgactagtgtaagagattacatttgatagttt--attgtctata------------------------
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 16
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaag-ctcaatgttttatttcattgtttcattga------acataatccttttacgtagt-----tcattatcttgt---tggctagtgcaagagattgcatttgaaagtttat-----------
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 20
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacg-tctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtc--ttaat-cacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgaacataatta---tttcggatagttcatt-atctagttgactagtgtaagagattacatttgatagttt--attgtctata------------------------
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 14
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacg-tctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGACGGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAgtaaggtttacatttaattatgtcattttat----gaggcaaactgaacaattttacata-----aatcattgtctggtttgctggtatttcaagt-ttgataattgata-----------------
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA14G37520.1 (Glycine max), 5'ss of exon 22
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGACCGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAGTAAG-
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 14
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacg-tctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGACCGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAgtaaggtttacatttaattatgtcattttatgt-ggcaa---actgaaccattttacata-----aatcattgtctggttagctagtattgcaagt-ttgataattggta-----------------
upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 14
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
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GTTTATGAGCCAGTGGAAGAAGGCTCTTACATCAAAATGATTGATATGGTTGGTGGCCAAGATGGACAGATACAGgtaagtttcacc----tcttaaatgattaacagagacatgcttttaattatgtacttaaggtttactaagtgcatgtt--tggatacatttcctattttttggttt--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164116556|gb|ES087977.1|ES087977EST: GTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAA GTGAACAATATTAGTGGTTACCTTCCTGGGAGAATTGTATTTTTC
genomic: GTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctct ... tttgttgcagGTGAACAATATTAGTGGTTACCTTCCTGGGAGAATTGTATTTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatggctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA