Sequence
atgc intronic sequence ATGC exonic sequenceTCCCACCCTGGAGGTTTCTTGTTCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataatcttttataatttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G02890.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 11
TCCCACCCTGGAGGTTTCTTGTTCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataatcttttataat-ttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacag
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ACTCAACCCGGCAGTCTTCTGTTTACCAAGTTTGGAAGCAATCAGACAGCACTGCTTGATCTTGCTTTTCCGgtacaagaatcatatccattgctcttcatactttgatttaaagcatggtg------aagttctagcatggaagttccagtgcttttctttccctgtaccttttttt-----------
upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 14
TCCCACCCTGGAGGTTTCTTGTTCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataatcttttataatttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacag
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ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGgtataagaaccactgtcattgctcttcttaccttg-gtttaaagcttgtgcat-----ttctagcatggaagttacagttcttgtctttttctgtaccttcacact----------
upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 10
TCCCACCCTGGAGGTTTCTTGTTCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataatcttttataatttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacag
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ACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGgtataagaaccactgccattgctcttcttaccttg-atttaaagcttgtgtat-----ttctagcatggaagttacagttcttgtctttttctgtaccttcacact----------
upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 14
TCCCACCCTGGAGGTTTCTTGTTCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataatcttttataatttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatt-tttcatgtcatctacag
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TCCCATCCTGGTGGTCTTTTATTCACGAAGTTTGGAAGCAACCAAACAGCTTTACTTGACCTGGCATTTCCGgtatgctta-cattagtatgtttttgtgtg--------ctgatgtgcgcttggagtaactgtagtgcatatatatc--tgttttacatgtgtgctactggttttttgttat------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059541|gb|DR355298.1|DR355298EST: TCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCG GATACTTTTGGTGGTAGACTGCAGGATAGGAACACAGAAATGCCTAAAGCA
genomic: TCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataat ... tcatctacagGATACTTTTGGTGGTAGACTGCAGGATAGGAACACAGAAATGCCTAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCCACCCTGGAGGTTTCTTGTTCACAAAGTTTGGCAGCAACCAGACAGCACTGCTGGACCTTGCATTTCCGgtatgataatcttttataatttctagattataagacatctaatattctttcccctggattgtaacttgtaaatgacgatgcattatatttagagtgatttttcatgtcatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA