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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 14
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag
 ||||||||| | ||||| |||||||||||||||||||||||  | |||||    ||||||  |||||||||  |||||||||| || || || |||||||||      ||  | | ||  |||    |   |||  | ||      | |  |     |      |||  || |   |  |      |  | | ||||| ||    | ||                                          
TTCAATGGCTCTTACACCATGGTTAGCTGCTGGTGGCCAGTTTTTGGCATCAAAATTTGAGCAGCATGATGTGAGAAGTTTATTACCTGTGGAAAGTGAGgtatcttcttt--tcactctcata---gaccaacccatgtt------ttaccttctgtttcgatgacctttttttttttgc------tgcaatagaggacatttgcaaaaacttagt-----------------------------------

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 14
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatcttaatgattcaaatatagaat-ttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag
 ||||||||| | ||||| |||||||||||||| || |||||  | |||||    ||||||  |||||||||  | |||||||||||||| || |||||||||    | |   || | | | | | |  | || | ||  |||  | ||  |  ||     ||| ||    | |   |  |  ||| |   ||  |        ||  ||                                           
TTCAATGGCTCTGACACCATGGTTAGCTGCTGGAGGGCAGTTTCTGGCATCAAAATTTGAGCAGCATGATGTGAGGAGTTTATTGCCCGTGGAAAGTGAGgta----tttgtttgttcccacttttgcttcttgcttcggtta--cgatgttgcattg--tatgtaatt-ttggcgac--atgcatccaaaagcagtttgccatatctcac------------------------------------------

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 21
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatctt--aatgattca---aatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctca-cacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag
 |||||||| |||||||| ||| ||||||| || |||||||| ||||| || |||||||||  | |||||||| ||||||||||||| || || |||||||||  |    |  ||||| |     | ||   | ||||    || ||| ||  ||||| | |       ||  |  | |   |   |||  |  || ||  |                                                        
-TCAATGGCCATCACACCATGGCTAGCTGCAGGAGGCCAGTTGATTGCTTCCCGTTTTGAGCAGAATGATGTTAGAAGTTTATTGCCGGTAGAAAGTGAGGtaaaatctcttaaatgagttgctgactagtaattttataaataatagtcatgaattt-ttagcttcaaaagtatctatgattgggcactcttactggtgca--------------------------------------------------------

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 13
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtagga--atcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag
 ||||||||  |||| || ||| ||||||  || || ||| |  |||| || ||||||||| ||||||||||||||||||||||||| || || ||||||||| ||  | ||  | || | |     ||    |     |||| ||   |  ||  | || | |      |     |    | ||||| | || |  |  || |                                                  
TTCAATGGCCCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGCTGCATGATGTTCGAAGTTTATTGCCTGTGGAAAGTGAGgtaagatcacctgcaagagtaactggcagggacttatattattggg-gttgtttctttaagcttattttaaaaaaaaaa--aaacattttttaat-aaaaaagt--------------------------------------------------

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA03G01600.1 (Glycine max), 5'ss of exon 6
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatc-ttaatgattcaaatatagaatttacctctattaggcaat--aatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag
 ||||||||| |||| || ||| ||||||  || || ||| |  |||| || ||||||||||| || ||||||||||||||||| || || || ||||||||| ||    ||| |||      | || |  ||| ||  |  ||||  |  ||||||| |   || |||| ||   | ||      |    ||   ||  |   |  |                                               
TTCAATGGCTCTCACTCCATGGCTAGCTGAAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGTTACACGATGTTCGAAGTTTATTACCTGTGGAAAGTGAGgtaagatcagttactgacagggctttata--ttaactgcaaaaggctgtgaaatttat-agctatagaactacc-attgccagtgga----ctgagtgctgtcttttt-----------------------------------------------

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 12
CTCAATGGCTATCACACCCTGGTTAGCTGCTGGTGGCCAGTTAATTGCATCTCGTTTTGAGTTGCATGATGTTCGAAGTTTATTGCCCGTCGAGAGTGAGgtaggaatcttaatgattcaaatatagaatttacctctattaggcaataatttatcaatcatggaaccacttgtagctcacacattctctagttgaggaaatcattacaaggccgactgatgagaatttttcttgtctgattttatttgcag
 || |||||  | || || |||||||||||||| || || |||||||| ||||||||||||  ||||||||| |||||||| || || || ||||||||||||  | ||| ||| ||     |  | |  |    |  ||||   ||  || |||  |    |  |    |||  ||    |||    | |    ||    |  ||                                              
TTCTATGGCCCTGACCCCATGGTTAGCTGCTGGAGGACAATTAATTGCGTCTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAGgtaaaattctcaat-ataatggttcacagcta---ttgattacagaagcatatattgacatggtgagtttttgatgcatgaacacatccaaaactagc--ttggtt----------------------------------------------