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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTACGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTTACCCTTCTATTATACAGgttagcagattgtttctatttctcaagcctttggtggatgtttccgcctgcttggtagttaacagtcatgatattttcag

Basic information

species Arabidopsis thaliana
transcript AT5G67100.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 14
AGCCTACGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTTACCCTTCTATTATACAGgttagcagattgtttct-----atttctcaagcctttggtggatgtttccgcctgcttggtagttaacagtcatgatattttcag------------------------------------------------------------------
  | |||||||| |||||||| |||||||||||||  ||  |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||| |||||||  |  || |||||     || | |  ||  || |     |   | |  |   |||| | |   | ||  |  |   ||                                                                     
TTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacag

upper sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 12
AGCCTACGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTTACCCTTCTATTATACAGgttagcagattgtttctat---ttctcaagcctttggtggatgttt-ccgcctgcttggtagttaacagtc--atgatattttcag------------------------------------------------------------------------------
||||||| | |||||| |||| ||||| |||||||||||||| |||||||| ||| | || ||| |||| |||||||| ||||||||||| || || ||||| |   | || | ||| |   |||| |  |  |   |   | | |  | |   |    ||  |  |  ||  |   ||| | |                                                                                
AGCCTACTCCGGTGGATTGGTTTTGGAACCAAAGAGAGGCTTGTATGACAAGTATATATTACTTTTGGACTTCAATAGCCTTTACCCTTCAATCATTCAGgtaatttgcttttctctctcccttcttactctctctctctttatctatctctctccctctatctgtccatctaactctatctccctccaccccctctccaatcaattgtttcttttcctccttttacatattttttatgagcactaatacttcattgtttacag

upper sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: EFJ15342 (Selaginella moellendorffii), 5'ss of exon 15
AGCCTACGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTTACCCTTCTATTATACAGgttagcagattgtttctatttctcaagcctttggtggatgtttccgcctgcttggtagttaacagtcatgatattttcag
 || ||| |||| ||  ||||  | || || || |  ||  | || ||||| ||| | |||||||||||||||||||||||||| || ||||| || |||||    |  ||||   || |  ||||       |   | | || |   | |||  |  | ||  | | |           
GGCTTACACTGGCGGGTTGGTTCTCGAACCGAAAAAGGGGCTTTACGACAAGTATATTTTGCTTCTGGATTTCAATAGTCTTTATCCATCTATAATCCAGgt----attttgtcgttagtattcaaa-----agctcacggtttctttttctttttcatgaaatgccttag---------

upper sequence: AT5G67100.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: EFJ25004 (Selaginella moellendorffii), 5'ss of exon 15
AGCCTACGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCTGGATTTCAATAGTCTTTACCCTTCTATTATACAGgttagcagattgtttctatttctcaagcctttggtggatgtttccgcctgcttggtagttaacagtcatgatattttcag
 || ||| |||| ||  ||||  | || || || |  ||  | || ||||| ||| | |||||||||||||||||||||||||| || ||||| || |||||    |  ||||   || |  ||||       |   | | || ||  | |||  |  | ||  | | |           
GGCTTACACTGGCGGCTTGGTTCTCGAACCGAAAAAGGGGCTTTACGACAAGTATATTTTGCTTCTGGATTTCAATAGTCTTTATCCATCTATAATCCAGgt----attttgtcgttagtattcaaa-----agctcacggtttcgttttctttttcatgaaatgccgtag---------