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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCAATCTGCTGACCTCAACGATCAAAGTTGATGCAGATCAGACCGATCTAAGATTCTGCTTTAGAATAATTTCACCAACAAAAGTTTATACATTGCAGgtatgtttccaagtgaaaagatcttcattttcttcaacatattgaatttttcttttaggattcatgatactttggtgttctcttccatcatccccgaatgaccagaattttttaaatcttattgatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G61980.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61980.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 13
CGTCAATCTGCTGACCTCAACGATCAAAGTTGATGCAGATCAGACCGATCTAAGATTCTGCTTTAGAATAATTTCACCAACAAAAGTTTATACATTGCAGgtatgtttccaagtgaaaagatcttcattttcttcaacatattgaatttttcttttaggattcatgatactttggtgttctcttccatcatccccgaatgaccagaattttttaaatcttattgatgtag
 || ||| ||||||| ||||| || ||||| |||||||| ||  | ||||| || |||||||| |||||||||||||| ||||| || || ||| | ||||||||  | |||     |||||  | ||| ||||||   | | |||| |   |     |||   |  || ||  |||    | || ||  |    ||                                 
TGTAAATTTGCTGACATCAACCATTAAAGTGGATGCAGAACAATCAGATCTGAGGTTCTGCTTCAGAATAATTTCACCCACAAAGGTCTACACACTACAGgtatgagtacaatattgaagatgat-attgtcttca---tgtcgaatataattc----gatatttcctatttaagtgacaccatctat--tttttgagcag-----------------------------