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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag

Basic information

species Arabidopsis thaliana
transcript AT5G53430.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 5
GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag
 || |||||||||||||  |||||||||| |||||| ||||| ||||| ||||| || || ||||| ||| ||||||||||||  | |  ||||||||||||       |   |       | | | |   | || |    |||||    |||    ||    ||  ||      ||   | | | |  |  |  |   |  |                                             
TACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGgtgggggttttggttac---caccttttcttgtctgtttcaataatgtacttaatatct----ttcttttaaaagaaaaatatagcacatcactatcactttatggt-----------------------------------------

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 14
GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtacatacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag
 || |||||||||||||  |||||||| | |||||| ||||| || || ||||| || |||||||| ||| | ||||||||||||| |  |||||| ||||||||    |   | || || ||       |          | |  ||   |||   |    || |  || || ||  ||||  | |  || ||   | |      || ||  | |||                              
CACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTAAAGgtacagtatttgctgctagaaatttcccctga---------aaaggaatgctagtcacca-ggtgaagtgattttattcttt--gtatattccatgctat------ctcaattgtcag------------------------------

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 14
GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtaca-tacctgattcctggatatcatattcggcctatcgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag
 || |||||||||||||  |||||||| | |||||| ||||| || || ||||| || |||||||| ||| | ||||||||||||| |  |||||| |||||| | || ||| | |    || ||      |        || || | || | | |   |  ||| | ||     ||  ||||    |     ||||||||  || |                                          
CACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTAAAGgtaaagtatctgctgctaaaat-tcccccctgaaaaggaatgttagttag-tcaccagttaaagtgattt-----tattctttgcatattccacactatgtcaaaga------------------------------------------

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 14
GACATGTGCTTGGTTTCAGCCTGAAGTATGTTTTGCAAGTGAAGAAAAAATGGAACCAGCTTTGGGGATTTTGAGTATTCCATCAAGTAATTTTGTGAAGgtaca-tacctgattc--ctggatatcatattcggcctat-cgtgataataagattagctcctgcagttacttgtttctaaccttttgggaagtttcactatgtgcaaaactaaaaagccagaaaccttatcctgtttttgatatattccag
 || |||||||||||||| |||||||| | |||  ||||||| ||||| ||||| || ||| | || || ||||| |||||||||| |  |||| | |||||| |  | ||| ||   |||    ||| |   |    |  |||| |  ||    |      || ||            ||  | |||| | ||||| |    | |                                              
CACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGAGCCTGCTGTTGGCATCTTGAGCATTCCATCAAATTCTTTTATAAAGgtaaagcaactgttttagctgctagtcacaactgcttcacacgtgttcttattcatctgctttgtagggg---------aaaatcttggcatgtttctccccattcttt-------------------------------------------