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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGGAAACCATGTAGCCGTGACAATTGGTGGGTCGAATGGTCATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaatctctttacttgtgatttttttgtcatttatactctattaaaatttaatcttaactatttgatctcatgtctttactag

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 5'ss of exon 11
GTTATGGGAAACCATGTAGCCGTGACAATTGGTGGGTCGAATGGTCATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaatctctttacttgtgattt---ttttgtcatttata-ctctattaaaatttaatcttaa-ctatttgatctcatgtctttactag--------
||||||||||||||||| ||| | ||| | ||||| || ||||||||||||||  | ||||||| ||||||| | || || ||||  ||||||| ||||  ||    |   ||||||| |||    ||||||  ||| || || ||   ||  |  || |    ||||| ||| |  | |||  | | |        
GTTATGGGAAACCATGTGGCCATTACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTATACAAGCCGCTGATTGCTAGCGGCCTCTTACGTgtatgttttagttgctacttgttattaatgttttgtactttgtaactttaaagaagctccatttagttctattggatatt-tttctgcattggcttctttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080103|gb|DR375860.1|DR375860
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|116428257|gb|EG470849.1|EG470849
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|124769634|gb|EH859764.1|EH859764
EST:     CTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: CTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|86075192|gb|DR370949.1|DR370949
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATRGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
EST: gi|125272629|gb|EL286714.1|EL286714
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAG
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAG
EST: gi|116456305|gb|EG498897.1|EG498897
EST:     ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACAT                         TCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT
genomic: ATTTTGAATTGAATGTATTCAAGCCGGTTATCGCAAGCGCTCTCTTACATgtacattaat ... tctttactagTCCATTAGACTAATAGCAGATGCTTCAGCTTCATTTGAGAAAAACTGTGTT