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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGAGCTTGGTTTGATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtttttactgctgtatcgaagattttcgattgtttttagtattatgaatctcagatctttctatgtttggtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G43810.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 13
AACCGAGCTTGGTTTGATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgt---gaatagtttttactgctgtatcgaagattt---tcgattgt----ttttagtattatgaa----------tctcagatctttctatgtttgg--tttcag-------------
||| ||  | || |||||||| ||||||||  | || |||||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| || |||||    |||| || | |     | |   || | ||   | |  |       | |||| | ||| |          |  |||   |    |||  | |  |||| |             
AACTGACTTGGGGTTGATATCACAATGTTGCTTAACCAAACATGTTTTCAAGATCAGCAAGCAGTACCTGGCAAATGTCTCACTTAAAATCAATGTTAAGgtaccaaatacttataaaccaagcagttaatacttagcttgtctacacaaatgtagtgtaatgcagtaagcagacttgcagcattgctaatgccttgcatttcggagttgtgatacag

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 13
AACCGAGCTTGGTTTGATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtttttactgctgtatcgaagattttcgattgtttttagtattatgaatctcagatctttctatgtttggtttcag----------------------
|||||| |||||||| || |||||||||||| | ||||| ||||| || ||||| |  || |||||| |||| ||||| || || |||||||| || |||||   | |||||  ||    |      ||  |   || | | ||  |  || || | ||| ||||        ||  |  ||                       
AACCGACCTTGGTTTAATTTCTCAATGTTGTTTGACAAAGCATGTCTTTAAGATCACAAAGCAGTATTTGGCTAATGTGTCTCTGAAAATCAATGTCAAGgt---ttgttttctctcaaatcctagtgacatgaaatagctctt--tcctaagactttcaaatctactatcaatttctgccaattgtctgacaattctccgtttt

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: PP1S173_134V6.1 (Physcomitrella patens), 5'ss of exon 12
AACCGAGCTTGGTTTGATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtttt---tactgctgtatc----gaagattttcgattgtttttagtattatgaatctcagatctttctatgt-ttggtttcag---------------------------------------------------------------------------------
 || |  || ||  |  | |||||||||||| | || |||||||| || ||||| |||||||||||  ||||||||||  |||| |||||||| || ||||| | |  | ||   |||| |  | ||    ||      | ||||| | | |  | | |       |||  || ||| |   || ||| |                                                                                  
GACTGTCCTGGGGGTCGTGTCTCAATGTTGTTTGACGAAACATGTATTTAAGATGAGCAAACAGTACTTGGCAAATGTTGCCCTGAAAATCAATGTCAAGgtca-tgctcttgaatacttccatttctcctgatatggcttgattgatctcaagaatgttctagaaagagtttcctaggagctgatttaaaactgttcaaaacttggaatagatgattgttcaagtgcagatgactatttctttttctttacgttcactctgtatttgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828868|gb|CK118552.1|CK118552
EST:     AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAG                         ATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCA
genomic: AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtt ... ttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCA
EST: gi|86072813|gb|DR368570.1|DR368570
EST:     AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAG                         ATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATTCCA
genomic: AGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACGTAAAGgtgaatagtt ... ttggtttcagATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCA