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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtccctttcattgtttcttgaatatatcctaccaggtaattactctcatattcatacttagttcaatgtatgaatgttgtctggttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G41880.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA14G03200.1 (Glycine max), 5'ss of exon 12
GTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtccctttcattgtttcttgaatatatcctaccaggtaattactctcatattc-atacttagttcaatgtatgaatgttgtctggttttcag----------
||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||||   | | ||  ||      |  |||  |   |  || ||  | | |   || | | ||   |      || |   |  | |||||||  |          
GTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGgttagtat-ataattgtgcacaattattat-tgatatattttttatgaggctcgagaattcactggtgacattataatcatatggttttatggttttatgat

upper sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA02G45610.1 (Glycine max), 5'ss of exon 12
GTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtc--cctttcat-tgtttcttgaatatatcctacc-aggtaattactctcatattcatacttagttcaatgtatgaatgttgtc-tggtt-ttcag---
||||| ||||| ||||| ||||||||||| ||||| || || || ||||| ||||||||||    | | || ||||| |  |  || |  ||   |  |||  | |   || ||   |        |||  |   |||   |  |  |  |||||   
GTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgtaatatgtttatgcacaattttttattgacataaccagttgaattttttgagggttgagaattcactgatgacattataatcattcagctt

upper sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 12
GTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtccctttcattgtttcttgaatatatcctaccaggtaattactctcatattcatacttagttcaatgtatgaatgttgtctggttttcag-------------
||||||||||| |||||||||||||| |||||||| || || || || ||||||||||||     ||     |  |||    |  | ||  |  ||   |    |||  |       | |    | |  | | ||| |   ||||                 
GTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAGgttagggtccagaatatttg----ttacttatgaaatatgaatatacatgatgtgggaaaatctgttattgggaagtttttctgtttagcataacgcttgaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164173880|gb|ES059873.1|ES059873
EST:     ACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAG                         GTCGTGTCTGTGTTCCTATTGACCCGAATAACTGT
genomic: ACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtccctttca ... tggttttcagGTCGTGTCTGTGTTCCTATTGACCCGAATAACTGT
EST: gi|164017049|gb|ES141105.1|ES141105
EST:     ACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAG                         GTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCAT
genomic: ACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtccctttca ... tggttttcagGTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCAT