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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGCAACCTTCAGAGGCAATGTACATGAAACTAACTgtaagtatatgatgaacaaacaaacataatttactaattactctgaccttgaaccactacagtgaaccataacgcttttggctatgcttttgctacacag

Basic information

species Arabidopsis thaliana
transcript AT5G40760.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 12
GTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGCAACCTTCAGAGGCAATGTACATGAAACTAACTgtaagtatatgatgaacaaacaa-acataatttactaattactctgaccttgaa---------ccactacagtgaa-ccataacgcttttggctatgcttttgctacacag---------------------
|| ||| ||||||||| || |||||||| |||||| | || || ||||| || |||||||||||||| |||||||||  | | |        || |||||||  |||  |  |  ||  | | ||         | ||| |||| ||    || | | ||| |  ||| |  || || |                        
GTAAAAGGCAAGGAAGAAATGAGTTTGTCATACGCCTTCAGCCATCAGAAGCCATGTACATGAAACTTACTgtaagttca-gctacttgtgtaatacataat--actcctctccttggtcctaaagctacttccctactccagtaaaattttatcacattttga-atgttagtggtataatattagtcaatgacttcttccag

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 13
GTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGCAACCTTCAGAGGCAATGTACATGAAACTAACTgtaagtata--tgatgaacaaa---caaacataatttactaattactctgaccttgaaccactacagtg--aaccata-acgcttttggctatgc--ttttgctacacag----------------------------------------
|  | ||||||||||| || |||||||| |||||| | ||||| ||||| || ||||||||||||||||||||||||     |  |  || |    | ||  |  | |  | || | |   || |     || | |  ||  |||  || ||||   |   ||||   |||   |    ||                                        
GCAAGAAGCAAGGAAGAAATGAGTTTGTTATACGCCTCCAACCATCAGAAGCCATGTACATGAAACTAACTgtaagtcctgctagttcactagggtctaatttcttgttttgatgagtaaaacgtcatgacatttctttggaaactgtacacgccgatatatatggggtttgaatgtgtagcagaatctctaattaatctttgaaaattaaattgatgcag

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G031107_T02 (Zea mays), 5'ss of exon 13
GTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGCAACCTTCAGAGGCAATGTACATGAAACTAACTgtaagtatatgatgaacaaacaaacataatttactaattactctgaccttgaaccactacagtgaaccataacgcttttgg-ctatgcttttgctacacag----------
|  | || ||||| ||||| |||||||| |||||| |||| || ||||| || ||||||||||||||||| |||  || ||      |    ||   ||   |   |||| | |   | |||    |        ||  |  | ||    |   | |   | |     ||            
GCAAGAAACAAGGCAGGAATGAGTTTGTCATACGCCTGCAGCCATCAGAAGCCATGTACATGAAACTAACGgtacatacatttacctctgtaaactctagcctttgaatttccc--gctttgtttaaaggagagaaaaaaagatgcggcagaattgtatgtctaaagaacgaacttttgcag

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 13
GTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGCAACCTTCAGAGGCAATGTACATGAAACTAACTgtaagtatatgatgaacaaacaaacataatttactaattactctgaccttgaaccactacagtgaaccataacgcttttggctatgcttttgctacacag--
|||||||||| || || || |||||||| |||||| ||||||||||||| || ||||||||||| || || ||| || ||| ||   |  | ||   |  | |   || |  |||| | ||            | | |  |     |||    | |    |||  |||     
GTCAAAAGCAGGGGAGAAATGAGTTTGTTATACGCCTGCAACCTTCAGAAGCTATGTACATGAAGCTTACAgtatgtctatcatt--ctgataatacttttatgagaactgttctgccatttgtttgacctgattacctctggaagtttcatatgtatcattgagacaagtat