Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGgtaaggctcttataaaaactctgaaagaagtaatgtgttagtatgtcgaaagagtagtaaacattcatacgtctgctatttaccaccattaatgttattt...

Basic information

species Arabidopsis thaliana
transcript AT5G26780.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 10
TCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGgtaaggctcttataaaaactctgaaagaagtaatgtgttagtatgtcgaaa---gagtagtaaacattcatacgtctgctatttaccaccattaatgttattt
||||||||||| || || ||||||   || || ||||||||||||||||| || ||||||||||||||||| || ||||| || || |||||| | ||||||||              | |  |      |  | | ||| | |    |||   || | | |||   ||| |  || |||    |  | |||  |        
TCAAGAGTGGAGAAGGTTTTAGAAAACGTGCACATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatct--------gcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctca-atatcagct--ccatgatcatgcag-------

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G135283_T02 (Zea mays), 5'ss of exon 12
TCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGgtaaggctcttataaaaactctgaaagaagtaatgtgttagtatgtcgaaagagtagtaaacattcatacgtctgctatttaccaccattaatgttattt
||||| ||||| || || ||||||   || |||||||||||||||||||| || ||||||||||||||||| || ||||| || || |||||| | ||||||| |    ||    | |   ||   | | || | | ||  ||  |    | | |  |||  |||    |  | |  ||  |                  
TCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAGGCATCAGGATGGgtacgatattttgtcatagaatgtttgta-tactttattcttaattttgcaaattcttaa-tattagctctcccgtcatgcag-----------------

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 13
TCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGgtaaggctcttataaaaactctgaaagaagtaatgtgttagtatgtcgaaagagtagtaaacattcat-acgtctgctatttaccaccattaatgttattt
|| ||||| ||||| ||  | |||| ||| || |||||||| || || || ||||||||||| ||||| |||||||||||||| |||||||| || |||||||  |  ||  |     || ||       |         |  ||    |  | || |  || || || | |||  || | | |       |         
TCTAGAGTTGAAAAGGTTCTTGAATCAGTTCACATTGCAGCCAATAAAAACACTGTTCCTGGGGATGTGTCTGCCATGGTTCCTGGTGGCATTCGAATGGgtagtgtactcctc----ctttgtttctcttgcctctactgattgctagataattacttcactttgatgaagtcatctctcttctgttggcacctcag---

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 5'ss of exon 12
TCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGgtaaggctcttataaaaactctgaaagaagtaatgtgttagtatgtcgaaagagtagtaaacattcatacgtctgctatttaccaccattaatgttattt----
||||| |||||   |||  | ||  | |  || ||||||||||||||||| |||||||| || ||||| |||||  |||| || || || |||||||||||||||  | | |   || ||||  ||  |||| | |  |  | ||   || ||     | | |     |        | |||   | |||||||| || |    
TCAAGGGTGGAGCGAGTGATGGAGCTTGCCCACATTGCAGCAAACAAGAACACTGTTCCAGGAGATGTGTCTGCATTGGTACCTGGAGGTATCCGTATGGgtaag--tgtaaacgaagctctcgaatcagtagtcttcttatttga-aaacgatctagagataaaaccagtgaaatgacttaatgc-attaatgtaatcttgta