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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGGgtaagcacccttggaatttggcagctcattttattatctctttgtgatatatcccgtacgaccataatgtgggttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G24810.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os06g48770.2 (Oryza sativa), 5'ss of exon 12
GACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGGgtaagcacccttggaatttggcagctcattttatta-tctctttgtgatatatcccgtacgaccataatgtgggttttcag---------
| || ||| |  |  | |||||| |||| |||||||| ||||||||||| |||||||| |||||   | || |||||| ||   |||     |||  |  ||  ||  |  |  ||    || |   |||   |       | || |  |  |||           
GGCTATCAGCATCACTAAATGTTAGGATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGGgtgagatgcct----gtttatctactgtttgcaggagccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtag

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G140917_T01 (Zea mays), 5'ss of exon 14
GACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGGgtaagcaccct-tggaatttggcagctcattttatt---atctctttgtgatatatcccgtacgaccataatgtgggttttcag-------------------------------------
| |||||| || |  | |||||| |||| |||||||||||||||||||| |||||||| |||||   | ||||||||| || ||    ||  ||||    |    | | ||    ||   |     || | |   |||  | |||||| |   | ||                                        
GTCTTTCAGCTTCACTAAATGTTAGGATAGTTTATCTGGACATCATGAGGCCATTTGCTGAATCAACTTTGTTAGGgtgagaacgagatgctatttacttgacattgtcatgccaatggttgcaccatctttatagtaaaaacataatctctctcttttctctcattgctgattttttatgtcttcactttggtcag

upper sequence: AT5G24810.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv04s0008g02740.t01 (Vitis vinifera), 5'ss of exon 12
GACTTTCATCTACTATGAATGTTCGGATTGTTTATCTGGACATCATGAGACCATTTGCCGAATCTGTTCTGTTAGGgtaagcac-ccttggaatttggcagctcat--tttattatctctttgtgatatatcccgtacgaccataatgtgggttttcag------
| |||||| | |  ||| ||||||| ||    ||| | || ||||||||||||||||| |||||||||||   |||||||| |   | |  | | |   |  || |  |||||| | | |       || || | |   |   |    |   ||||  |      
GGCTTTCAACCATAATGGATGTTCGCATCAGCTATTTAGATATCATGAGACCATTTGCTGAATCTGTTCTACAAGGgtaagtatgtcctcaactgtattatgtcgtagtttattttgtttgcccttcatttctcattgaattgtggatttttttttttgtgttag