Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAATGCATGATCAAATGCACAATCTCCAGATGCTTGAAGCTGCTTTTTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCGgtacatcattcttctgaattctacttaaataatatccgcttaaatctcatattgcctatgattttgaacag

Basic information

species Arabidopsis thaliana
transcript AT5G18230.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 13
GCCAATGCATGATCAAATGCACAATCTCCAGATGCTTGAAGCTGCTTTTTACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCGgtacatcattcttctgaattctacttaaat--aatatccgcttaaatctcatattgcctatgattttgaacag------------------
|   |||||||||||  |  ||||||| ||||||||||| |||||||||||||| | |||||||||   ||| || |||||| | ||   |||| |||| |||   || | |  ||| || |     | |  ||  |   ||  |  |   |||    ||| | | |                        
GGGGATGCATGATCAGCTTTACAATCTACAGATGCTTGAGGCTGCTTTTTACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagtatcttgatttatgtggtattgcaaagttttctatagccatttatacggtataaatatatgtttttcctgtttcttctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164030746|gb|ES157039.1|ES157039
EST:     CCCTATTCTCCG                         AGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
genomic: CCCTATTCTCCGgtacatcatt ... ttttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
EST: gi|116424314|gb|EG466906.1|EG466906
EST:     ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCG                         AGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
genomic: ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCGgtacatcatt ... ttttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
EST: gi|116407887|gb|EG450479.1|EG450479
EST:     ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCG                         AGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC
genomic: ACAAACGTCCTCAACCCTCAGATTCAGAACGTCCTAGACCCTATTCTCCGgtacatcatt ... ttttgaacagAGGAACCCAGCAATCACACCTCAAACATTTCCCCAAACACAAGCACCAATC