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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATGGATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAGgtaataatcgcttgaagcatataggaatcaatcaattttatattaactcaccatttgcattttcttggcag

Basic information

species Arabidopsis thaliana
transcript AT5G18190.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os03g57940.1 (Oryza sativa), 5'ss of exon 13
CTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATGGATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAGgtaataatcgcttgaagcatataggaatcaatcaatttt-----atattaactcaccattt-gcattttcttggcag-------
 |||||  | ||  | || ||| | ||||| ||||||||||||||||||||||| ||    || |||||||||||  | |||   || || || ||||||||   | | |||        |       ||  || ||||     ||    | ||   | |    |||  ||||   |       
TTGTGTCTCTTCTTCCGCAAATTTTTGGGCTCTCATAATGGATGCTGGGACTGGCTTTTGTTCCCAAGTTTATGAGCTTTCACAAGTGTTTCTGCACAAGgtg-cactggctatttctccaccccttccatccagttttgatgaatccagagtcctgactccatattaccttgtttgtacatag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 5'ss of exon 13
CTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATGGATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAGgtaa----taatcgcttgaagcat-ataggaatcaatca-attttatattaactcaccatttgcattttcttggcag---------
 ||||| || ||  |||| ||||| |||||||||||||||||||| || ||||| |||   ||||||||| ||||  | ||| | || || || || |||||||     ||||  |||| |  | |||   |  | |   ||| | | ||  || |   |    | | | ||   |          
TTGTGTGGCGTCTTCAGCAAATCTTTGGGCCCTCATAATGGATGCAGGAACTGGTTTCCTTTCTCAAGTTCATGAGCTCTCACCAGTTTTTCTGCATAAGgtaaagtacaatctgttgaggtgtgataattagtacttggattatttgtttgctgagagtcctaactctgtttcaattatacatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125016263|gb|EL088532.1|EL088532
EST:     TGTCTTCCTTCACAAG                         GACTGGATTATGGTAACAATGGGAAAAGAACTACTATATCAGTTCCATAGC
genomic: TGTCTTCCTTCACAAGgtaataatcg ... ttcttggcagGACTGGATTATGG-AACAATGGGAAAAGAACTACTATATCAGTTCCATAGC
EST: gi|19875875|gb|AU236706.1|AU236706
EST:     CTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAG                         GACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCT
genomic: CTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAGgtaataatcg ... ttcttggcagGACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCT