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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAGGATACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTgtatttctatctactctcagctgtttctcgcaatacatcttgctttgctgctcgaccacaacaaataatccattggcatttcttag

Basic information

species Arabidopsis thaliana
transcript AT5G13560.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13560.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G43840.1 (Glycine max), 5'ss of exon 13
GTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAGGATACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTgtatttctatctactctcagctgtttctcgcaatacatcttgctttgctgctcgaccacaacaaataatccattggcatttcttag----------------
||| |   |||||||| |||||||| || |||||||||||||| || ||||| ||| |||||||||| ||| ||   ||||  || || ||||||     |||| |  |  |   || |      |   | |||      || |||| |||| |   |  |     | |  | ||| |   ||  |                
GTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGTGGTCAAATGCAGAAATTAATGACAAGCAGGTCAAgtatgt--aattgaacttactgaacttaagtaatgataaatgttttgatgcttgtagaagagtctaatttgagtggtaagactccgtgtgtatataaatata

upper sequence: AT5G13560.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA20G38530.1 (Glycine max), 5'ss of exon 13
GTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAGGATACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTgtatttctatctactctcagctgtttc-tcgcaatacatcttgctttgctgctcgaccacaacaaat-----aatccattggc-atttcttag-------
||| |   |||||||| |||||||| || |||||||||||||| || ||||| ||| |||||||| | ||| ||   |||| ||| || ||||||     |||| |   |  |||  ||    ||   |    ||| || ||    ||||  | |  |        |     | |    |||  || |  | |       
GTAGGGTTGAAGCAGATGTTATCAAAACCTGGATTAATTTTCTGGAAGATACTTGGGTTCTTCAGCGGTCAAATGCAGAAATGAACGACAAGCAGGTCAAgtatgtaattgaacttacaaaacttaaataatgataaatgttttgatgcttgttgttctttgttggtttgttattttgctggttatgttcttgtgtttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125284212|gb|EL298297.1|EL298297
EST:     ACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTT                         GGACGAATTGGAGAAG
genomic: ACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTgtatttctat ... catttcttagGGACGAATTGGAGAAG