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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttgattcagagtgtttgttactgccttaaaactttattgtatacatgtttgcccaagtttaatagttttcactcagtgtttacttatgtttgtcagtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G13300.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 13
AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttgatt------cagag---tgtt-------tgttactgccttaaaactttattgtatacatgtttgcccaagtttaatagttttcactcagtgtttactt--atgtttgtcagtgcag
 |||||||| || || ||||| |||||||  || ||||| ||||| |||||| |||| ||||| || || || || || |||||||||||||| ||||||||   | |      ||||    ||||       | ||| |    || |  | ||||  |   || ||||   |  |   | | || |  ||   |  | || |  |  | | |  | ||||
CGTGAACTTGCTAACATCAACCATTAAAGCTGATGCTGACCAATCGGATCTGCGGTTCTGCTTCAGAATAATTTCTCCCACAAAAAACTACACTTTGCAGgtacaaatatttaccagaaatctgttgcatctattttatttagatagatttatattacaggaatttttgaatagctgccagatttcttccttcctaatgacatgcacctctatttgggcag

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 4
AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttgattcagagtgtttgttactgccttaaaactttattgtatacatgtttgcccaagtttaatagttttcactcagtgtttacttatgtttgtcagtgcag
 || || ||| | || ||||| |||||||| || ||||| ||||||||||||||||| ||||| || ||  | ||||| ||||||| |||||| ||||||||      ||  || | || | | | ||     | |||||| ||     | ||   ||| ||     |    ||||  ||   || | || |  | | |||||
TGTAAATTTATTGACATCAACCATTAAAGTTGATGCTGAACAATCAGATCTGAGGTTCTGCTTCAGAATTTTTTCACCCACAAAAATCTACACATTGCAGgtacaccacat-gtttatggtgcagtct----gccttattg-at-----tctgattaagatt-----tcaatactccatgaacacatctgctattta-tgcag

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 13
AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttga---ttcagagtgtttgttactgcct-taaaactttattgtatacatgtttgcccaag---tttaatag-ttttcactcagtgtttacttatgtttgtcagtgcag----------------
 || ||||| || || || || |||||||| || || || |||||||||||| |||| ||||| || || || || || ||||| ||||||||||||||||| |||   || |  |  | ||||  |  || |     | ||  | ||  |||||     |||   || |||||   | |      | || | || ||| |     ||                   
TGTAAACTTGCTAACATCGACCATTAAAGTTGATGCAGACCAATCAGATCTGCGGTTCTGCTTCAGAATAATTTCTCCCACAAAGAACTACACGTTGCAGgtatgaagcttaaatgcatatgttgatatctgtttctttatacaggatg-atgttatatgaagctgttcaatagacatacttgtgatattgatttctgtctagtgatgtgcattggaaattgtgcag

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 13
AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttgattcagagtgtttgttactgccttaaaactttattgtatacatgtttgcccaagtttaatagttttcactcagtgtttacttatgtttgtcagtgcag
 |||||||| || || |||||||||||||| || ||||| ||||||||| |||||||||||||  ||||||| ||||||||||| |||||||| |||||||||  ||| |  |||||| ||      ||      ||  |  |   ||| |     ||| || |||||||     || |  ||| ||||| ||||||||||||
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCTACAAAGAACTACACTTTGCAGgtt--atttaatgtgttttttggatttttttttaattcatacaaggatggtgattaaagctttatagttt-----cattccttaattatgcttgtcagtgcag

upper sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 13
AGTGAACTTACTCACCTCAACAATTAAAGTCGACGCTGATCAATCAGATCTGAGGTTTTGCTTTAGGATCATATCACCTACAAAAAACTACACGTTGCAGgtttgattcagagtgtttgttactgccttaaaactttattgtatacatgtttgcccaagtttaatagttttcactcagtgtttacttatgtttgtcagtgcag
 |||||||| || || |||||||||||||| || ||||| ||||||||| |||||||||||||  ||||||| ||||| || || ||||| || |||||||||  ||| |  |||||  |||     ||  || |    |  ||  ||| |     ||| || |||||||     || |  ||| ||||| ||||||||||||
TGTGAACTTGCTTACATCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACCAAGAACTATACTTTGCAGgtt--atttaatgtgttctttagatttttttaattca--tacatggatggtgattaaagctttatagttt-----cattccttaattatgcttgtcagtgcag