1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTACAATGTGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTgtaagtcccttaaatcctctcggttttctgttccattatatagttctgtgtcattagtcagagatctttaaactcatgcttttggtgggtattttttggcag
species | Arabidopsis thaliana |
transcript | AT5G01460.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTT GGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGTEST: gi|125306325|gb|EL320410.1|EL320410
genomic: TCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTgtaagtccct ... tttttggcagGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGT
EST: GGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTAAGCCTTT GGATGGAGAAGAAAAAAGCCGAGCGGEST: gi|86085438|gb|DR381197.1|DR381197
genomic: GGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATT--GCCTTTgtaagtccct ... tttttggcagGGATGGAGAAGAAAAAAGCCGAGCGG
EST: TCGGGTTTGTTGTCCTCGCTGGATTGACCDKTTTATATTACATTGCCTTT GGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGTEST: gi|164014980|gb|ES085915.1|ES085915
genomic: TCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTgtaagtccct ... tttttggcagGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGT
EST: CCTCGCTGGATTGACCTTTTTATATTACATTGCCTTT GGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTACTACCTAATGEST: gi|86087673|gb|DR383432.1|DR383432
genomic: CCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTgtaagtccct ... tttttggcagGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCT-CTACCTAATG
EST: TCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTT AGA-GAGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATG
genomic: TCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTgtaagtccct ... tttttggcagGGATG-GAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAATGTGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTgtaagtcccttaaatcctctcggttttctgttccattatatagttctgtgtcattagtcagagatctttaaactcatgcttttggtgggtattttttggcag
- - - - - - - - - - - - - - - - - GCTGGA