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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacatactctgactcttcttaattagtgttcactgaatggttcttgactctaaattgattttggtgtgcaaag

Basic information

species Arabidopsis thaliana
transcript AT4G32630.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116405912|gb|EG448504.1|EG448504
EST:     GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG                         GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
EST: gi|116405919|gb|EG448511.1|EG448511
EST:     GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG                         GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
EST: gi|116405914|gb|EG448506.1|EG448506
EST:     GTGCACTAGTGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG                         GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
EST: gi|116405910|gb|EG448502.1|EG448502
EST:     GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAG                         GCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA
genomic: GTGCACTAATGGGGCAGCAATCACAGGTGAATATGTCCCCATCATTCAGgtacatacat ... gtgtgcaaagGCAAGAGTATAGTGGTCTTGGTACAGAAGGAAATACGTTCAACGGAGTACA