1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcctctttagtacattgtttcagctgattctttacatctaaaagtttcatgaatatggaactaaaattggtgatccaaaagaattattcttgatttcacaactcgaaagtatgctcag
species | Arabidopsis thaliana |
transcript | AT4G32420.4 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG GTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTTTCTGTTATCGCAACCGEST: gi|124997114|gb|EL069383.1|EL069383
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
EST: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG GTATAGAAGAAGAAGCCGEST: gi|116409463|gb|EG452055.1|EG452055
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCG
EST: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG GTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTTTCTGTTATCGCAACCGEST: gi|116443354|gb|EG485946.1|EG485946
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
EST: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAG GTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
genomic: TTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcc ... gtatgctcagGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATCGCAACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAGGAAGAACACCTCCAAGgtacttatcctctttagtacattgtttcagctgattctttacatctaaaagtttcatgaatatggaactaaaattggtgatccaaaagaattattcttgatttcacaactcgaaagtatgctcag
- - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC