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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGACAAATATTTCCATAGTAACGATAATCCCGTCGTTGCTGGAGCTCTGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagtttttttttttttttaatatgggaacctctgtgtcacaatttttcgccattcattctcactcagctctctttctcag

Basic information

species Arabidopsis thaliana
transcript AT4G28470.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 15
TCTCGACAAATATTTCCATAGTAACGATAATCCCGTCGTTGCTGGAGCTCTGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagtttttttttt------tttttaatatgggaacctctgtgtcacaatttttcgccattcattctcac--tcagct--ctctttctcag
  | ||||| || ||||||||||| |||||||  ||| ||||||| ||  | ||||||||||| ||||| |||||| | || |||||||| ||||| ||||||||||||||| ||      |||   | ||  ||   | ||   || |  || |     |  |   |     |||  |  ||| || ||||
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag

upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 15
TCTCGACAAATATTTCCATAGTAACGATAATCCCGTCGTTGCTGGAGCTCTGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagttttttttttttt--------ttaatatgggaacctc-tgtgtcacaatttttcgccattcattctcactcagctctctttctcag
  | ||||| || ||||||||||| |||||||  ||| ||||||| ||  | ||||| ||||| ||||| |||||| | || |||||||| ||||| ||||||||||||||| || ||        |  ||||| ||   |    | ||  | ||| |    |||   ||||| |   |||  ||||    
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGTGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattgttaccttggctcgatatgagagtatgacatatcttagtttctaa--attagatctcattttactccttttcag--

upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 15
TCTCGACAAATATTTCCATAGTAACGATAATCCCGTCGTTGCTGGAGCTCTGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagtttttttttt-tttttaatatgg-gaacctctgtg-tcacaatttttcgccattcattctcactcagctctctttctcag
  | ||||| ||||| || || || || || |  ||| ||||||| || ||  | || ||||||||||| ||||||||||||||||||||||| || || || ||||   || |  ||| | ||||   |||| ||| || |       ||    | |    ||  |        ||||  ||||
AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttcccttgtcatttctcatattttgaacatctatgattgtggaattgtatcctgagatcatatgtt-taatcttcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164025323|gb|ES107379.1|ES107379
EST:     TGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCT                         GCATTTGCCCTT
genomic: TGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagttttt ... tctttctcagGCATTTGCCCTT