Sequence
atgc intronic sequence ATGC exonic sequenceCTTGTTTATGAGAAATTGCCAAATGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGgtaattaacccgtctttcttcatcactttttactgaaaacattttatttcatatttctctttgctgtaatacacatttgttagccaattcaacacacttgaagtgcctagtgacactgaaattatacatcttgtcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G26510.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 13
CTTGTTTATGAGAAATTGCCAAATGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGgtaattaacccgtctttcttcatcactttttactgaaaacattttatttcatatttctctttgctgtaatacacatttgttag--ccaattcaacacacttgaagtgcctagtgacactgaa----attatacatcttgtcag-----------------
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CTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGgtttgtcattctcttttgtattgatgttgcaagtgtgtgcaacctaattgccgttactgagtagctcacataataataataagattggatttgaaagaaattgatt-cttggttttgctggttttcatttgaaataaccttggaacattttcatccttag
upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 13
CTTGTTTATGAGAAATTGCCAAATGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGgtaattaacccgtctttcttcatcactttttactgaaaacattttatttcatatttctctttgctgtaatacacatttgttagccaattcaacacacttgaagtgcctagtgacactgaaattatacatcttgtcag------------------------------
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-TAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGt-------ttgtcatttttttttgttttgaagttgcaagtctgtgtagcctaattgccgttacagagtacctcacataataataataagagtggatttgaaagaaattgatatttggttttgctggttttcatttgaattaaccttggaacattttcatccttaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86077649|gb|DR373406.1|DR373406EST: TGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAG GAAACTCAGCGGTTGAAGCTATCAACCTCCTTATAAGCAAGGGCGTACCTG
genomic: TGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGgtaattaacc ... atcttgtcagGAAACTCAGCGGTTGAAGCTATCAACCTCCTTATAAGCAAGGGCGTACCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGTTTATGAGAAATTGCCAAATGATATCTCAGAGAGGCATGTCCTATTGTTGGATCCTATTCTCGGGACAGgtaattaacccgtctttcttcatcactttttactgaaaacattttatttcatatttctctttgctgtaatacacatttgttagccaattcaacacacttgaagtgcctagtgacactgaaattatacatcttgtcag
- - - - - - - - - - - - - - - - GAGAGG