Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAACAGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgtttgcattgcacacgaataattcttctttaaatgatctccaactcgcataacacgttctcatacttgtgttcccag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G24190.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 13
GAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAACAGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgtttgcattgcacacgaataattcttctttaaatgatctccaactcgcataacacgttctcatact----------tgtgttcccag--------------
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GAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAACAATTAGAGAAATCACCGTTCCTTGAGAGGCTAACCAAAAAGAACTACGAGgtgtgttaccgagaggcctcatttttttacag-tatcttatgtcatgcattctatgttttttttttttgaaaagaatgtattctatggtttctccttatgg
upper sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 13
GAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAACAGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgt---ttgcattgcacacgaataattcttctttaa-atgatctccaa---ctcgcataacacgttctcatacttgtgttcccag---------------------
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GAAGTCAGGGCAGAAAGACATCTTCTACATCACGGGAAGCAGCAAAGAGCAGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatgctgctggtggtttatccacttccattatagtgtctgagatctggaatacagcttgtgggaagtaacgctgtcgcttgatttttttgtttgtgcag
upper sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 15
GAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAACAGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgtttgcat---tgcacacgaataattc---ttctttaaat-----gatctccaactc-gcataacacgttctcatact-tgtgttcccag------------------------
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GAAGCCAGGGCAGAAAGACATCTTCTACCTCACGGGAAGCAGCAAAGATCAGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124915909|gb|EH989783.1|EH989783EST: AGCTAGAGAAATCTCCATTCCTAGAGAGGCTCATCAAGAAGGGCTATGAG GTCATCTTCTTCACAGACCCAGTTGATGAAT
genomic: AGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgtttgcattg ... gtgttcccagGTCATCTTCTTCACAGACCCAGTTGATGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAAGAGCCAAAAGGACATATTTTACATCACAGGAAGCAGCAAGGAACAGCTAGAGAAATCTCCATTCCTGGAGAGGCTCATCAAGAAGGGCTATGAGgtttgcattgcacacgaataattcttctttaaatgatctccaactcgcataacacgttctcatacttgtgttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG