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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCGTGATTCTCTGGATGATAAGTCAAAGGCTAATCTGGTTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAGgttggtatttaatttactgctattaattttcctatttctttgacggtaactaacaatacaatctactctag

Basic information

species Arabidopsis thaliana
transcript AT4G24100.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24100.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA20G35970.2 (Glycine max), 5'ss of exon 11
GATTCCGTGATTCTCTGGATGATAAGTCAAAGGCTAATCTGGTTCAGA---AAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAGgt-tggtatttaatttactgc--tattaattttcctatttct-ttgacggtaactaacaatacaatctactctag
||||| | |||||  ||||||||||||| ||||||||||| || || |   |||||||||||||||| ||||||| |||| ||||||| | |||||| || | |||| |||  |    |||||||     | |  || | |||  |    |   |    || |    |||
GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttttagttttttttcttattaatcaaattgtccctatcgacaattttaactgacttcatattgaatag

upper sequence: AT4G24100.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G31630.3 (Glycine max), 5'ss of exon 11
GATTCCGTGATTCTCTGGATGATAAGTCAAAGGCTAATCTGGTTCAGA---AAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAGgt-tggtatttaatttactgctattaattttcctatttct-ttgacgg---taactaacaatacaatctactctag
||||| | |||||  ||||||||||||| ||||||||||| || || |   |||||||||||||||| ||||||| |||| ||||||| | |||||| || | |||| |||  |  |||||||       |  || | |||      |||| ||   |  || |    |||
GATTCAGAGATTCCTTGGATGATAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGACGATTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGgtatgctttttagttttttcttattaatcaaatggtccctatcgacaacttcaactgacttcatcatatggaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436409|gb|EG479001.1|EG479001
EST:     TTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAG                         GATGTTCCATTAAGTATAGTCCCTCGTCGATCTCCACAG
genomic: TTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAGgttggtattt ... tctactctagGATGTTCCATTAAGTATAGTCCCTCGTCGATCTCCACAG
EST: gi|116436432|gb|EG479024.1|EG479024
EST:     TTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAG                         GATGTTCCATTAAGTATAGTCCCTCGTCGATCTCCACAG
genomic: TTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATCTTGCGAAGgttggtattt ... tctactctagGATGTTCCATTAAGTATAGTCCCTCGTCGATCTCCACAG