1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TAAATTTGGTTATATGAAGAAGGGACAGTCTCATGTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAGgtggcaaagttcttcaataaaattctatactacacaacatcagaagagcctatcactcttcgttttgaaattttatagcaattatttcttttgctttaccacttag
species | Arabidopsis thaliana |
transcript | AT4G23850.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGTCTCATGTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAG GTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCTEST: gi|125281889|gb|EL295974.1|EL295974
genomic: AGTCTCATGTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAGgtggcaaagt ... taccacttagGTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCT
EST: AGTCTCATGTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAG GTTAAACAAGGACTCGGAGGCAAEST: gi|125226324|gb|EL240409.1|EL240409
genomic: AGTCTCATGTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAGgtggcaaagt ... taccacttagGTTAAACAAGGACTCGGAGGCAA
EST: TGTTCAGCAAG GTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCTATCTGGAGCTGCTEST: gi|125003081|gb|EL075350.1|EL075350
genomic: TGTTCAGCAAGgtggcaaagt ... taccacttagGTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCTATCTGGAGCTGCT
EST: GTCTCATGTTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAG GTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCTA
genomic: GTCTCATG-TGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAGgtggcaaagt ... taccacttagGTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAATTTGGTTATATGAAGAAGGGACAGTCTCATGTGGAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAGgtggcaaagttcttcaataaaattctatactacacaacatcagaagagcctatcactcttcgttttgaaattttatagcaattatttcttttgctttaccacttag
- - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG