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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCTCCACAAACATCTCGGCGATTTCCTCTCCACTAACTGCATCACTCCCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttcttcctctctctctccatctctgcatttgattcctttttaagctaagttttaacacgtttttgttgcttcttttag

Basic information

species Arabidopsis thaliana
transcript AT4G16760.2
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125317129|gb|EL331214.1|EL331214
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGGCCTAAT
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAAT
EST: gi|164208842|gb|ES022273.1|ES022273
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGCCCTAATGCGGTTG
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAATGCGGTTG
EST: gi|124824373|gb|EH909239.1|EH909239
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGGCCTAATGCGGTTGCACTTGT
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAATGCGGTTGCACTTGT
EST: gi|124980383|gb|EL053339.1|EL053339
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGGCCTAATGCGGTTGCACTTGTGGACGCC
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAATGCGGTTGCACTTGTGGACGCC
EST: gi|124917133|gb|EH991007.1|EH991007
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTT
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTT
EST: gi|116448278|gb|EG490870.1|EG490870
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTTCAATTACACCGACCAT
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTTCAATTACACCGACCAT
EST: gi|116479261|gb|EG521853.1|EG521853
EST:     CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAG                         GTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTTCAATTACACCGACCAT
genomic: CCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttctt ... cttcttttagGTCCGGCCTAATGCGGTTGCACTTGTGGACGCCTTCAATTACACCGACCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCCTCCACAAACATCTCGGCGATTTCCTCTCCACTAACTGCATCACTCCCAAACAAGCCTCTCTTGCTAACGACCAGCTCCGTTCCTTATACACTCAGgttctttcttcctctctctctccatctctgcatttgattcctttttaagctaagttttaacacgtttttgttgcttcttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC