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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacacgatagattgatttctttttctttgcttttaacttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT4G05520.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 13
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagcc-attagtttcac----ttgtacacacgataga--ttgatttctttttctttgcttttaacttgtg-cag
|| |||||||| ||||||||| || | ||||||||||| ||||| |||||||||||||| ||| | ||||| || || ||||||| | |        | | | |  |   |  || | | | |||     | || | | | |     ||| | | |  | | |   | |   ||     ||     ||||| |||| |||
CTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGgtatgatgtcatcttccccagaagcttcaccttcacatatggcaatgcatcgatcaatctgatggttttgcaaagatcacacaaccttaccactgacaattccaaattaacatgtgacag

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G065012_T01 (Zea mays), 5'ss of exon 13
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgt---tttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacacgatagattgatttctttttctttgcttttaacttgtgcag
|| ||||||||||| |||||| || |||||||||| || |||||||||||||||||||| ||| | |||||||| || |||||||    || ||   ||  | ||  | ||       |  || | |  || |  |   |                                                       
CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAACACACCAGAAGTCATGCGTGTCTACATAGGgtatggccattcttactgtcgatcagaacttacatttgacaaactaattaaactgtcgatcag----------------------------------------------------

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 13
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatg----ttttt----tcgagtacaacatg------------------aattgtcaacaaagaagtcaaaaagc--cattagtttcacttgt--acacacgatagattgatttctttttctttgcttttaacttgtgcag
|| ||||||||||| |||||| || |||||||||| || |||||||||||||||||||| ||| | |||||||| || |||||||    || ||    ||||  | ||| |                   || |||| |  | | ||    |  ||  ||| ||  |||||     ||| || | | | |||  |  |   ||     ||     |      
CTGATGAGAGTGTACGGAGCACTGCTGTGGTCGCTCGGGAAAGTCCTGAACACACCAGAAGTCATGCGTGTCTACATAGGgtatggccattcttactgtcgatcagaacttacatttgacaaactaattaaactgtcgatcaggtagcaccatggctgcatcagcgtcactgaaaaacaaacaaaaaactgaaataatcgcctcgatcttctttctag----

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA17G01310.1 (Glycine max), 5'ss of exon 13
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacacgatagattgatttctttttctttgcttttaacttgtgcag
|| |||||||| ||||||||||||||||||||  | || ||||| ||||| || ||||| || || ||||| ||||||||||| |||  |     | |||    |  |  | |  ||    | |   |  || | | |  | |  |  |    |    |   ||    || |  ||  ||            
CTCATGAGAGTTTATGGAGCATTGATGTGGTCTTTGGGGAAAGTTCTGAATACTCCAGAAGTTGTGCGTGTATATATTGGgtaggttactcatctttcaaatacagctaacgattaatgctttattta--caatggatcaattcatgtatttaaccattcatttaagattgcactgtcttgc----------

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G39450.1 (Glycine max), 5'ss of exon 13
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacacgatagattgatttctttttctttgcttttaacttgtgcag
|| |||||||| ||||||||||||||||||||  | || ||||| ||||| || ||||| || || ||||| ||||||||||| |||  |     | |||    |  |    |  ||    | |   |  || | | |  | |     |    |   ||||||||    ||      | ||           
CTCATGAGAGTTTATGGAGCATTGATGTGGTCTTTGGGGAAAGTTCTGAATACTCCAGAAGTTGTGCGTGTATATATTGGgtacgttactcaactttcaaatacagctaatgattaatgctttattta--caatggatcaattcaagtatttaacc-attgatttaagattgcactgtcttgt---------

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 12
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacac-gatagattgatttctttttctttgcttttaacttgtgcag
|| |||||||| |||||||||||||||||||| || |||||||| || || || || || ||   |||||| || || ||||| |||||||           | |  | ||||   | | ||| ||    |    | ||  |||  |   |  || | |||||    || ||      || ||   | |    
CTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCTGAAGTTACACGTGTATACATAGGgtaagtttttt----------gttatctttcaa---atatgtctaacgttccacggctttgcttacaagtattgaaaaattgaaccattctttcaaatttatattgtcttgga

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA09G01160.1 (Glycine max), 5'ss of exon 11
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacacgatagattgatttctttttctttgcttttaac-ttgtgcag
|| |||||||| |||||||||||||||||||| || |||||||| || || || || || ||   |||||| ||||||||||| |   ||        |   | |  | ||||   | | ||  ||    |  | | ||  |||| |   |    | ||||||   || ||      || ||   |  || | 
CTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCCGAAGTTACACGTGTATATATTGGgtaggggctt--------attgttatctttcaa---atatgtttaacgttccatggctttgcttgcaagtattg-aaattgatccattctttcaaatttatactgtcttgta-

upper sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 14
CTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGGgtatgttttttcgagtacaacatgaattgtcaacaaagaagtcaaaaagccattagtttcacttgtacacacgatagattgatttctttttctttgcttttaacttgtgcag
|||||||| || ||||| |||||||||||||| ||||| |||||  |||| || || ||||| || || || ||||||||||| | || ||    |     ||  | | |      | ||  |     |   || |    |      |   | |   ||  |   ||||   | | |||||           
CTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGGgtacgattctttttctttcctatctaatttattttgacaaacctccttgtatttgggactaa--aggcctgcaacccatgaagagctttgcgtgttcttttg----------