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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATGgtttgtgtgtttttagcttagcaaagtaatgttgttccatctttgaaaaatctgccctgaacatcttttcgtgtgacag

Basic information

species Arabidopsis thaliana
transcript AT4G00570.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00570.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
GTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATGgtttgtgtgtttttagcttagcaaagtaatgttgttccatctttgaaaaatctgccctg----aacatcttttcgtgtg-acag------------
|| || ||||| ||||||||||| || ||   ||| ||||| |||||||| ||||| ||||||||  |||||||||||||| |    | | || |||     |    ||   ||    | | || || |||      |||| ||||  | || | |             
GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctccattgacatttttttctttgcatattctatggtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125219924|gb|EL234009.1|EL234009
EST:     TGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATG                         CCGAGTGCACTGCTGCTGATGCTTTCAAACACGCCGGAGG
genomic: TGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATGgtttgtgtgt ... cgtgtgacagCCGAGTGCACTGCTGCTGATGCTTTCAAACACGCCGGAGG
EST: gi|116463393|gb|EG505985.1|EG505985
EST:     TGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATG                         CCGAGTGCACTGCTGCTGATGCTTTCAAACACGCCGGAGGAAACATTGTCT
genomic: TGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATGgtttgtgtgt ... cgtgtgacagCCGAGTGCACTGCTGCTGATGCTTTCAAACACGCCGGAGGAAACATTGTCT