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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATGCAGAGATTTCTAGgtatccaattcctatcaatctttataacgtatctctgttctttgtaatttatacttaaccttcttgtcttgcttcacctaattgattttttgtactgaacatgtggcttccaaatttcaag

Basic information

species Arabidopsis thaliana
transcript AT3G61480.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G052750_T02 (Zea mays), 5'ss of exon 12
AAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATGCAGAGATTTCTAGgtatccaattcctatcaatctttat-----aacgta------tctctgtt-ctttgtaat-------ttatacttaaccttcttgtcttgcttcacctaattgattttttgtactgaacatgtggcttccaaatttcaag
| || || || | ||| ||| | || || ||||| ||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||||| || || |||||     || ||| |   || |||     |||  |        ||  || ||||  |||        |||| || |    |||  || |||   |       | ||||| | |   | |  |   ||   |||| ||  
ATGAAGCTTTGCGCTTGGCAAATTTGTCAGCAGAAAAACCTCACTTCTCTCACTGTCTAGAGTGGCTTCTGTTTACAGTATTTGATGCAGATATATCAAGgtactttttttctagcttgctatattctgaaacaaaggcaatcttccattgctttacaatgttccatctatagtttagtggctttgctagctgtgctctggcaagttttttttcctgatacatatttt---aattacag-

upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 13
AAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATGCAGAGATTTCTAGgta-tccaattcctatcaatctttataacgtatctctgttctttgtaatttatacttaaccttcttgtcttgcttcacctaattg-attttttgtactgaacatgtggcttccaaatttcaag
| || || |||    | ||| |  |||| || ||||| ||||| || || |||||||| ||||||||||||||||| || ||||| |||||||| || ||||| | |||||   |    |   ||      |  |  | |     ||||| | ||  |       |||| | ||     |||||  | |||    |  | | || |                 
AGGAAGCCTTAAGGCTTGCAGAGCTATCAGCTGAGAAGCCCCATTTTTCACATTGTCTAGAGTGGCTTCTTTTTACAGTATTTGAAGCAGAGATATCCAGgtacttcaatttggaaatgttagtacttgaaaaatgggataggactaattgacaccaag------tgtcatactgtgtataattacactttacaaaaagtaaattt-----------------

upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 13
AAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATGCAGAGATTTCTAGgtatccaattcctatcaatctttataacgtatctctgttctttgtaatttatacttaaccttcttgtcttgcttcacctaattgattttttgtactgaacatgtggcttccaaatttcaag
| || || ||||  || ||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||    |||  || ||     | ||    | |     | |   ||  |||  || |  || |     |||   |   |||  |     | |||||  || |   ||||           
AGGAAGCATTACGTTTGGCACAATTATCAGCAGAGAAGCCTCATTTTTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTATTTGATGCTGAAATTTCCAGgtat----ttctaatgaa-----agaataattattgaaccatatgaaagtatgattcatatttta----tgcaagaaaaaatgcagaagctctactgttcaag-aacttcatgg-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124789746|gb|EH879425.1|EH879425
EST:     ATTGTCTGGAGTGGCTTCTTTTTTACTGTTTTTGATGCAGAGATTTCTAG                         GCCAAATCCAAACAGGAACCAGATTTCAGGACCTGGACATCTTAAAAAGTT
genomic: ATTGTCTGGAGTGGCTTC-TTTTTACTGTTTTTGATGCAGAGATTTCTAGgtatccaatt ... aaatttcaagGCCAAATCCAAACAGGAACCAGATTTCAGGACCTGGACATCTTAAAAAGTT