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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCACACGAGAAAATTGGAGTTGTAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAAgtatgctttcaaatccatatttatctttattttgtgggtgagaaaaataaaattttgcattttgtggactgcctttggaaattatataacagaactccaa...

Basic information

species Arabidopsis thaliana
transcript AT3G27470.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 5'ss of exon 11
AACGCACACGAGAAAATTGGAGTTGTAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAAgtatgctttcaa-------atccatatttatctttattttgtgggtgagaaaaataaaattttgcattttgtggactgcctttggaaattatataacagaactccaa
   || || |||||||| ||||||||||| || || |||||| |||||||| ||||||| ||| | ||||| || |||       ||       | |  | || ||   |   || |   ||  | | || | | ||   ||||      |||||||    |                    
CCTGCTCATGAGAAAATAGGAGTTGTAGACGCCCAGTGGATTCTACATCAAAGTGTTCCCTCACTTGGGAACCAGgtaaaacactaagctatcaaccactgttcattgattccttatatatggaatagatgatacttactatttc-----ctgccttcaacag-------------------

upper sequence: AT3G27470.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 5'ss of exon 13
AACGCACACGAGAAAATTGGAGTTGTAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAAgtatgctttcaaatccat-atttatctttattttgtgggtgagaaaaataaaattttgcattttgtggactgcctttggaaattatataacagaactccaa
   ||||| || ||||||||||||||||||||||| |||||   |||||  | ||| | |||  ||   |     || ||  |||    | |  ||| |    |  | ||    |    | |    | || |    |       ||     |     || ||||  | | |   | 
CCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGgtttgtgttcctcacaaccattcactcgttctatgattcttccgagatcgcagttctaatgtcgaaatgctattcgttatggtt-tatagtaaagcaatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423910|gb|EG466502.1|EG466502
EST:     TAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAA                         GGACAACCAGAGCAAGGGAAACAACCATGGGAAGGG
genomic: TAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAAgtatgctttc ... atcttgacagGGACAACCAGAGCAAGGGAAACAACCATGGGAAGGG
EST: gi|116423977|gb|EG466569.1|EG466569
EST:     TAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAA                         GGACAACCAGAGCAAGGGAAACAACCATGGGAAGGG
genomic: TAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAAgtatgctttc ... atcttgacagGGACAACCAGAGCAAGGGAAACAACCATGGGAAGGG