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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataaatacaacttagaaatcacaatcaaaactagataaacaaagatattaccaaaacatgtgaaattttatgagtcttgggtttggttattctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G24430.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G09820.1 (Glycine max), 5'ss of exon 14
AGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataaatacaacttagaaatcacaatcaaaactagataaacaaagatattaccaaa-acatgtgaaattttatgagtcttgggtttggttattctgcag-
| | |  || || |||||  | |||||||| |||||||| || || |||||||||||||| || || || || ||||| ||||| || |||||||| ||||||   ||| |||||  | |||    | | ||   |    | ||| |||  | | |   |  | ||   | || |   | ||   | ||||  ||  ||  ||  
ATTGCAGTACGGTGATGTTCCTGAAGATATTGAACCTGAAGAAATTCGACCAATGGGAAATTATGCAGTTTCAATAACTTGGCCTGATGGGTTTAGTCAGgta---atatataca--tcagatgcgatagtccccagggaaaaaataaaactttaaatgagtagatagtatatgtaccgtgtaaagagtttttttcatcatcaac

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA09G31980.1 (Glycine max), 5'ss of exon 14
AGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgta-taaataaatacaacttagaaatcacaatcaaaactagataaacaaagatattaccaaaacatgtgaaattttatgagtcttgggtttggttattctgcag
| | |  ||  | ||| |  | |||||||| |||||||| || || |||||||||||||| || || || || ||||| ||||| || |||||||| |||||| || |||  |   |  |   |||| | |   |||| | | ||    | ||      | |  || || |    |    || |   |  | |||||  |    
ATTGCAGTACAGTGATATTCCTGAAGATATTGAACCTGAAGAAATTCGACCAATGGGAAATTATGCAGTTTCAATAACTTGGCCTGATGGGTTTAGTCAGgtaatatatacgtcagatgtgataatccccaaggaaacaataaaactttaaatgagtaaatagtatatgca---ctgacggtgtaaagagttgttatattatt-

upper sequence: AT3G24430.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 5'ss of exon 13
AGTTCTATATGGCGATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataaatacaacttagaaatcaca----atcaaaactagataaacaaagatattaccaaaac-atgtgaaattttatgagtcttgggtttggttattctgcag
| | |  ||||  |||||  |||||||||| || ||||| || || || ||||||||||| || ||||| || ||||| ||||| || || |||||||||||    ||  |||    |     || ||     ||||  |  |   ||| ||  |||  | |||| | |||  | | |||   |||     ||  ||  ||| |    
ACTACAGTATGCTGATGTTCCGGAAGATATTGAGCCTGAAGAAATTCGGCCAATGGGAAATTATGCTGTATCAATAACATGGCCAGATGGATTTAGCCAGgtgactatttatatgtttggtggatgactgtgtatcatcaaaatgcaaaaaattataccagcaaagccatgcaacactttgctagt----agtgcgggcatttt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125294081|gb|EL308166.1|EL308166
EST:     CAATGGGAAACTACGCTGTCTCGATAACCTGG-CCGACGGGTTTAGCCAG                         ATTGCTCCATATGACCAGTTGGAAGAAATTGAAAGGCTAGTAGATGTTCCT
genomic: CAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataa ... tattctgcagATTGCTCCATATGACCAGTTGGAAGAAATTGAAAGGCTAGTAGATGTTCCT
EST: gi|125019085|gb|EL091354.1|EL091354
EST:     CAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAG                         ATTGCTCCATATGACCAGTTG
genomic: CAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataa ... tattctgcagATTGCTCCATATGACCAGTTG
EST: gi|86085783|gb|DR381542.1|DR381542
EST:     CAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAG                         ATTGCTCCATATGACCAGTTGGAAGAAATTGAAAGGCTAGTAGATGTTCCT
genomic: CAATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataa ... tattctgcagATTGCTCCATATGACCAGTTGGAAGAAATTGAAAGGCTAGTAGATGTTCCT
EST: gi|124780997|gb|EH870940.1|EH870940
EST:     ATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAG                         ATTGCTCCATATGACCAGTTGGAAGAAATTGAAAGGCTAGTAGATGTTCCT
genomic: ATGGGAAACTACGCTGTCTCGATAACCTGGCCCGACGGGTTTAGCCAGgtataaataa ... tattctgcagATTGCTCCATATGACCAGTTGGAAGAAATTGAAAGGCTAGTAGATGTTCCT