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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATGAGGGTATATGGAGCTCTCATGTGGTCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatacctgtttcttcaactagtgacagtgttttgcttatataaaagcggtttgaaactaaaatgtatgttttgatgtccttgtttacttgctttgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G20290.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 13
CTAATGAGGGTATATGGAGCTCTCATGTGGTCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatacctgtttcttcaactagtgacagtgttttgcttatataaaagcggtttgaa-actaaaatgtatgttttgatgtccttgtttacttgctttgaacag
|| |||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||    ||||| || |||||||| |  |  || | | |  ||    | || |          |  |  |     ||||     || | || ||| ||| ||  |  |  |   || ||||      
CTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGGgtagat-tctctatctttataatagttcactgcaacagcagcagcttcagtttatttgtttgttatattgcatgcttttattgctatcctatatttcttta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124736709|gb|EH828111.1|EH828111
EST:     TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGG                         TTCCTTCAGTGATAAACCCATAAACG
genomic: TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACCCATAAACG
EST: gi|125111734|gb|EL163093.1|EL163093
EST:     TGTCTACATTGG                         TTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG
genomic: TGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG
EST: gi|125073180|gb|EL137609.1|EL137609
EST:     TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGG                         TTCCTTCAGTGATAAACC
genomic: TCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACC
EST: gi|164199269|gb|ES135074.1|ES135074
EST:     GGTCTCTCGTGTCTACATTGG                         TTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG
genomic: GGTCTCTCGTGTCTACATTGGgtaaacatac ... ctttgaacagTTCCTTCAGTGATAAACCCATAAACGAAGCTGCAACTGGTCCAATTGGGAG