Sequence
atgc intronic sequence ATGC exonic sequenceTGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G16950.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 13
TGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag
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TGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGgtaaatttttct---------accacatttatgtgta-ttggca--tttagttactaataatagtc----acaaagtct--tcactcttatttatcctgct-----tgtttggtaaatt-----tcaccgttttgtggtacaatgcag---------------------
upper sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 13
TGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag
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TGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGgtaaattttcctaccatagctgtcacatgtgag---agactg-ggatttagttcgtaatggttgcatgtgctgcatttggtttatttttgtcgat--------agcaacaagaaactttttatccgtctatatggtaactcccaacattgtt--gtgcta-caatgcag
upper sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 13
TGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag
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TGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATAGCATTAGGGACACATATTCAGgtaagtttttct--acca-catttatgtgtgcacctggcatttagt------tattaataatggtct-caaagtctttcactgttatttatcctgcctgtt-----tggtaaa---------tttcaccgttttgtggtacaatgcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164010224|gb|ES131104.1|ES131104EST: ACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAG GACATAAA-TTGGCAGTTCATGC
genomic: ACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttc ... atctctgcagGACATAAAATTGGCAGTTCATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACAATGGTGAAATCTTAGGAGTTCATATATTTGGACTGCATGCAGCTGACCTTATCCATGAAGCTTCTAATGCGATTGCTCTAGGAACGCGTATTCAGgtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC