Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGGgtaagtattaagttttagatcatatattttgattaggtaagtggatgctaaacatagctatttttatatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 12
GTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGGgtaagtattaagttttagatcat--atattttgattaggtaagtggatgcta-----aacatagcta--tttttatatgcag
|||||||| |||||  |   ||| ||||| |||||||||||||| ||||| || || || |||||||||||||||||| | | | ||||||| |    | | | ||  |  | |  || |   | | | |  ||  ||      | |  || |  |  |||| |  ||
GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctgttatcaaatattcgacaggtttacctg-tcattacatattatttctgataacgcgaactccttatctatag

upper sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv11s0016g01870.t01 (Vitis vinifera), 5'ss of exon 12
GTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGGgtaagtatt-------aagtt----ttagatcatatattttgattaggtaagtggatgctaaaca-tagctatttttatat-gcag
||||| || ||||| |||    | |||||||||||||||||||| || || || |||||||| || |||||||||||  |||||| || || |||       |||||    ||   |  |  ||||   ||   | |||     ||||||| | |||  || |  || | ||
GTCACTGCTTCACGCTTGCTGCTATCAAAGCAAACTATTCCTCATTATTATTTAACCGTGGACACTTGTGTTGACAAGCTGATGGAgtgagcattcaacaaaaagttcatctttcctttttaatttcccttttatgagtatgatctaaacaattgctgcttgtgcattgtag

upper sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 13
GTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGGgtaagtattaagt----------tttagatcata-----tattttgattaggtaagtggatgctaaacatagctatttttatatgcag----------------
 ||||||| |||||  |   ||| || ||||| |||||||| || || || ||||| ||||||||||||||||||||| | |||| || || ||||  |          |||| |  |||       |||  ||    |  |  |||   |    | ||| | | | | |                    
ATCACAGCTTCACGCCTATTATTATCGAAGCAGACTATTCCCCATTATTATTTGACAGTGGATACATGTGTTGACAAACTTATGGAgtgagcattagttccttccatcttttaaaaaataacccacgtttcaatcttctgtgatgatctaagctgttgctctctctctctctctctctctctctctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125139721|gb|EL178340.1|EL178340
EST:     ATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGG                         TCTTAGGAGTC
genomic: ATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGGgtaagtatta ... ttatatgcagTCTTAGGAGTC