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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgtacgtttcaacactttgttcaaaccggtttgcttcctactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G06370.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 12
TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgtacgtttcaacactttgttcaaaccggtttgcttcc-tactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag---------------------------------------
|||||||  ||||| |||||  |  | | | | || |||||||||||||| ||||| |||||||||||||||||||| ||  ||||| |||        |   ||||||          |  | |   |      |||| |  |    |  ||  | | || || ||| || | |  ||   ||                                        
TTCACAAGGTCAGGCCACACTCAACTCCCTAGTAATGCTATCATGATCACTAGTACAATCACTGTTGTTCTTTTCAGCACGATGgtaagttc-------tctctcaaacaaacacaaccctgtgcaatacatccttcggttcaaagggagacagtatgaaagctgatccctgaacaattccacaagttggttctgataaaatcatctctcttatgttccctcag

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 12
TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgtacgtttcaacactttgttcaaaccggtttgcttcctactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag-------
|| || |     || || || ||  | |  | ||| || ||||||||||| ||||||||||||||||| || ||||| ||  ||||  |   | | |  || |    |   |   | ||  || |||  | |   |  |       | | |||    | | |  | | ||      ||  | |        
TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacacta-atcttctcttgataagcacggtttgtagtga--ttatgccatgccccagatgttcaa----ttatcataccactggttgcttgaggacgagaaat

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 13
TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgtacgtttcaacactttgttcaaaccggtttgcttcctactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag----
|| || |     || || || ||  | |  | ||| || ||||||||||| ||||||||||||||||| || ||||| ||  ||||  |   | |  |||   |  |    |   | ||  || |||  | |   |  |||     | | |||    ||  | | |   |         ||       
TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacactaatcttcaattga-taagcacggtttgtagtga--ttatgccatgttccaaatgttcaattt-tataccactggttgcttgaggatgagaaatt

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 14
TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgta---cgtttcaacactttgt---tcaaaccggttt-gcttcctactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag
|| || |   |||| || ||  |  | |  ||||| || || |||||||||||||| ||| | ||||||||||||||||| ||||||   | | ||| | ||||||   |  || |  ||| |   || |||    | |||  |||  ||| || |   |    |    |   || ||    | |||    
TTTACTAGGGCAGGCCATACTCAATTGCGCGGGAATGCAATTATGATCACCAGTACTATCTCAGTTGTTCTTTTCAGTACAGTGgtaagacatctcagctctttgtggctacaatcaatttagagacccactc---tgaaacggggcctaggctgtttgaattctccagtttgctatattgatattt----