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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTAGCATCATCAGCTAATCTCTGGGCCATCATCATGGATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAGgtaaaacagctgaagcattaggatccatctatctgtcatacctattctctgactgtagcagctcaccatttgtttctggattctttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G03940.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 13
CTGTGTAGCATCATCAGCTAATCTCTGGGCCATCATCATGGATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAGgtaaaacagctgaagcattaggatccatctatctgtcatacctattctctgactgtagcagctcaccatttgtttctggattctttgcag
 |  |||||||| ||||| ||||| |||||  |||| |||||||| |||||||||||||  || ||||| |||||||||||  |  | ||||| || ||||||      ||  |   | | |     |   | |   | | | |  ||     | ||       |   | | ||  || | | |      
TTCAGTAGCATCTTCAGCCAATCTTTGGGCTCTCATTATGGATGCAGGGACTGGTTTCACATCCCAAGTATATGAACTGTCACCCATATTCCTTCATAAGgtatggt--ctcgattctcatgcatagtgctttttcta-agcaaggctacatttataagctacaagtgtcttttcttgcactttag----

upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G164265_T02 (Zea mays), 5'ss of exon 13
CTGTGTAGCATCATCAGCTAATCTCTGGGCCATCATCATGGATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAGgtaaaacagctgaagcattaggatccatctatctgtcatacctattctctgactgtagcagctcaccatttgtttctggattctttgcag
 ||||| || || || || || || |||||  |||||||||| ||||| ||||||||| ||||||||||||| || || ||  |||| || || ||||||||| |        ||  | | | |  |   |  || |  |    || | |  |   |    || ||  | |||||||  ||| |   |||
TTGTGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCTGGAACTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttatctgag--tcaagcttga---acatgcctaataatttatttagccagaaagcctaac--tctgtttcta-attataaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125087162|gb|EL146386.1|EL146386
EST:     CTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAG                         GACTGGATCATGGAACAATGGGAAAAGAACTACTATATCAGTTCC
genomic: CTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAGgtaaaacagc ... ttctttgcagGACTGGATCATGGAACAATGGGAAAAGAACTACTATATCAGTTCC