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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgggttgcaaccaataacattgcag

Basic information

species Arabidopsis thaliana
transcript AT2G47510.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 12
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgggttg-caaccaataacattgcag
|| || || || ||||| ||||||||||||||||| ||||||||||| |||||  |     | |   |||||   |  | |  |    | | ||| |      ||   || |    || |    | ||||||||      ||       || |||   
GGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAGgtgtgaat-gtgtgataatac---ccaattttacttgacttaatttgtccaatactcttatgcacttatattgt-actgtttgtacaaacagttctctactttgt--

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 12
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgt---aagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttg-actgtttg-ggttgcaaccaataacattgcag
||||| || ||||| || |||||||||||  |||| |||||||||||||||||   || |   || | | || | | |  || |      | ||    ||   ||  | |  |  ||  |  |   ||    |||||  ||||      |    ||      
GGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaaatttaatgtttgaagaaaattctaatct----ccatattcct---tgtgaggactacatattcatctattatgttgtttatggttaaggtgatctgcacc----

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 12
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgggttgcaaccaa-taacat-tgcag-----------------------------------------------
|||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||     ||  |  |   |  || |||  | |    ||||     |  |   ||      |||      |   |  | | ||  ||| ||  || | |||  |   |                                               
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA02G01930.1 (Glycine max), 5'ss of exon 12
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatac----attcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgg-gttgcaaccaataacattgcag
|||||||| || || || ||||||||||| ||||| ||||| ||||||||||||     ||  |     ||     || ||||||   ||||| || |  |||     | | ||   | |  |    ||   |  |||| ||    |   |  | ||| |||
GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGgtagacatcacttcattttattaaaatacttagttatgaccattgtagttagcaaaca-gtttccgtgacaggcaatttcttaattggtgtcatgattcacga-atttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 12
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatg----aatctagatgctaa-ggttgtattattgttcct-tgact---gtttgggttgcaacc--aataacattgcag-----------------------------------------
|||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||     ||  |  |   |  || |||  | |    ||||     |  ||     ||  | |||    |  ||| || |||||     |    |  |||    |||   || |                                            
GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatcaattcacctcattttattaaaatactttaatgttatgacttatggaatactgattggcaaacagtttctatgacttgtaataaaatcacaatttgaattttatggtgactggaaatttctgaattggtgtcatgattcatttatttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 5'ss of exon 10
GGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAGgtaagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttgactgtttgggttgcaaccaataacattgcag
|| ||||| ||||| ||||||||||||||  |||||||||| ||||| ||||||| |  || | |   |||  || || ||      |  | | | |  | | ||  |||| | | |||||| |        ||||||  |   | |    |     
GGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAGgtaactttcagccacatatattttttt-gttttattctttaattgttcaagtta--gttgaaat-ttgttcatgaggaagatgggtt-tatttatttttttcatt-