Sequence
atgc intronic sequence ATGC exonic sequenceGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCTTAAAGgtatttgtatgctgtttacaagatgaggatgaagttgattttagtcgcaagagaatatacagtgattaatatggcttacatggactttttag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G41740.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 13
GGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCTTAAAGgtatttgtatgctgtttacaagatgaggatgaagttgattttagtcgcaagagaatatacagtgattaatatggcttacatggactttttag-------
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GGTCGCATATTTGATGGTAAAGAGCCACCACAGTTTATTGCCCTTTTCCATCCAATGGTGGTCCTCAAGgtatc--------atttgcaaaatcca-atgctatttttattaacatatagagattgt-ctgaagttaat-taggttacctgacttgtgtctaactcag
upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 12
GGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCTTAAAGgta---tttgtatgctgtttacaaga--------tgaggatgaa-gttgatt-ttagtcgcaagagaatatacagtgattaatatggcttacatggactttttag---------------------------------
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GGTCGTATATTTCAAGGAAAAGAGCCACCACAGTTTGTTGCCATCTTTCAGCCTATGGTGGTCTTAAAGgtactctttcttgagtttatgtaagagcttaccctatatattagtattgattattacctctgttctaatatgtgcggtttgaaattggataagcacaatttattgctttgctttaatgctttgcccctcatttattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86064606|gb|DR360363.1|DR360363EST: AAGAGCCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCTTAAAG GGTGGTTTGAGCTCTGGGTACAAAAGCAGTATGGGAGAGTCAGAGTCAACA
genomic: AAGAGCCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCTTAAAGgtatttgtat ... gactttttagGGTGGTTTGAGCTCTGGGTACAAAAGCAGTATGGGAGAGTCAGAGTCAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGTTGCCCTTTTTCAACCTATGGTGGTCTTAAAGgtatttgtatgctgtttacaagatgaggatgaagttgattttagtcgcaagagaatatacagtgattaatatggcttacatggactttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG