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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGTGAAGTCAGGTGCTGCATATGTGCTCTTCTACAGGAGGAAGTCTGATGCAGGCGGAAAAATGACATAAGTCTGCTCAAAACGACAATCTCCGAGgtaacaaataccaaatttaattctaaaaagattcttaaaagaagtttagttagatcactgaaacgtagttgtggacttgtgtttacgcgtcttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G40930.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485624|gb|EG528216.1|EG528216
EST:     GATGCAGGCGGAAAAATGACATAAGTCTGCTCAAAACGACAATCTCCGAG                         GTTCCAGTAGTAATCTCTACACAGCTGTCTGCAACTTGGAACCCATAAGAG
genomic: GATGCAGGCGGAAAAATGACATAAGTCTGCTCAAAACGACAATCTCCGAGgtaacaaata ... cgtcttgcagGTTCCAGTAGTAATCTCTACACAGCTGTCTGCAACTTGGAACCCATAAGAG
EST: gi|124945914|gb|EL021880.1|EL021880
EST:     TGCTCAAAACGACAATCTCCGAG                         GTTCCAGTAGTAATCTCTACACAGCT
genomic: TGCTCAAAACGACAATCTCCGAGgtaacaaata ... cgtcttgcagGTTCCAGTAGTAATCTCTACACAGCT
EST: gi|116389223|gb|EG431815.1|EG431815
EST:     GATGCAGGCGGAAAAATGACATAAGTCTGCTCAAAACGACAATCTCCGAG                         GTTCCAGTAGTAATCTCTACACAGCTGTCTGCAACTTGGAACCCATAAGAG
genomic: GATGCAGGCGGAAAAATGACATAAGTCTGCTCAAAACGACAATCTCCGAGgtaacaaata ... cgtcttgcagGTTCCAGTAGTAATCTCTACACAGCTGTCTGCAACTTGGAACCCATAAGAG