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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAGgttcacaaaataaaactattattcccaaccctttgattgaaaacaaatcttaaccaataacacaaatatcaacag

Basic information

species Arabidopsis thaliana
transcript AT2G37500.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37500.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 12
GTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAGgttcacaaaataaaacta---ttattcccaaccctttgattgaaaacaaatcttaaccaataacacaaata-tcaacag----------------------------------------------------------------------------------------------------------------------
|| |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| || |||||| |     ||  | |    | | | |  ||| |  |  |   |       ||  |   || ||  |  | |  ||                                                                                                                        
GTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGTCTAATTGAGgttaagcgcttagcatttcattcacttcgcaccatcagcatagtatgctgcattttcttttagcatgatgacttgacgtttgatatacaaattgagttatctggcaactgctgcattcaattattcatcatatcaaatttcctttcttaatttcttcggtgtgacacaagcttctaaagtgcccattccctttgtag

upper sequence: AT2G37500.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 12
GTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAGgttcac----------aaaataaaactattattccca-accctttgattgaaaacaa-atcttaaccaataacacaaatatcaacag--------------
|| |||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||| | |||||              |  ||||   ||||     ||   |  |||||| |    |   | ||     ||||  ||| ||| ||                 
GTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGAGAAGGTGCAACATGCCTCGTTGAGgtatttttttgtgtcaaggataaggatatttgcatcatgactgttgatttatgtgattgtgttcttttataatccaa-tattaatcctccacagttcttgt

upper sequence: AT2G37500.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G19450.1 (Glycine max), 5'ss of exon 13
GTGATGCAAGGACTTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAGgt----tcacaaaataaaactattattcccaaccctttgattgaaaacaaatcttaaccaataacacaaatatcaacag----------------------
|| |||||||| ||||| |||||||||||||||||||| ||||| || ||||| ||| | |||||    |        ||   ||    |     |    ||| ||   |   || |  ||   |     | ||  ||| |                       
GTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGgtatttttttgtgtcaaggataaggatatttgcatcatgactgttgatttatgt-gactgttgttttatattccaatattaatcctccacagtccttgtgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428311|gb|EG470903.1|EG470903
EST:     TTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG                         GTAACTGTTAAAGGAACAGAAACTGAAGCAGAAGCAGCGAAAATTGCACGC
genomic: TTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAGgttcacaaaa ... atatcaacagGTAACTGTTAAAGGAACAGAAACTGAAGCAGAAGCAGCGAAAATTGCACGC
EST: gi|116428312|gb|EG470904.1|EG470904
EST:     TTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAG                         GTAACTGTTAAAGGAACAGAAACTGAAGCAGAAGCAGCGAAAATTGCACGC
genomic: TTGCTAAATCAATAGCTTGGGATGGTGAAGGTGCTACATGTCTCATCGAGgttcacaaaa ... atatcaacagGTAACTGTTAAAGGAACAGAAACTGAAGCAGAAGCAGCGAAAATTGCACGC