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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttattcttgacgcaatattctaaatttctaatccttcactgtcatatag

Basic information

species Arabidopsis thaliana
transcript AT2G34710.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 14
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttattcttgacgcaatattctaaatttctaatccttcactgtcatatag
      ||||||||| ||||| ||||| || ||||| |||||||||||||||||  |  | || || || |||||  | ||||| || ||  | |||  |  |    | ||  ||| | || |   ||   ||   | ||       |    | ||| | ||  | |  |   || |   |    ||   ||     
ATCTGCACAGCTTGTCTTTGCTCCTATTGACGAATCTTTTGCTGATGATGCACCACTTTTACCCTCAGGATTCCGTGTGATACCACTAGA-TACAAAAATGgt---atgactggtccataatcttattccaga---ggccttgtctttcccatgttggctcaccaattaaccgttatgcactcaaacctgcag----

upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G003509_T02 (Zea mays), 5'ss of exon 13
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgt-aacatgtcaaaaagccatttaaggatcagtcccaa-atcat---ttattcttgacgcaatattctaaatttctaatccttcactgtcatatag---
      ||||||||| || || |||||||||||||| |||||||| |||||||| ||||| || || || |||||  | ||||| |||||        |||   |||| |  || ||  | | | |    |   |||||||     |||    |||| ||||||  | | ||  |  |     |   |   |  ||| |  |   
TTGTGCACAGCTTGTCTTCGCTCCTATCGATGAATCTTTTGCTGACGATGCACCGTTGCTACCCTCTGGCTTCCGTGTGATACCGCTTGATG------CTAAGACGgtgagtatatcggagatcta---gacagtcagtcctggtgtcacgtattatccttgaca-actgtttaaggtacaacacattatgcactcaaactgcag

upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 14
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagcca-----tttaagg---atcagtcccaaatcatttattcttgacgcaatattctaaatttctaatccttcactgtcatatag
      ||||||||| ||||| |||||||||||||||||||| |||||||| |  || || ||||| |||||||||||||||||  | || |  ||| |   |   |  |  | |||  |   |      ||| | |   ||  |||   ||    || |  ||||     | ||||   ||| |  |  || | || |||    
ATGTGCACAGCTTGTGTTTGCACCTATCGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGCATCATACCATTGGATCCTAAAACAgttagtggcatttctcagtagctcgatagttttgaagggaattggtcatgaagttattttgtttgat-tgctcttcttt-tttttgttgtttaattgccatt---

upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttattcttgacgcaatatt-ctaaatttctaatccttcactgtc-atatag----
      ||||||||| ||||| ||||| |||||||||||||| |||||||| |  || || ||||| |||||||| ||||||||  | || |  ||| |   |   || |||| ||  |    | || |  | |  |     ||| | ||  || ||| |  || ||  |  |||| | ||  || | | |  || |      
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgtt--agtgacatttctcattagc-ttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt

upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 14
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATC----------TACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttatt-----cttgacgcaatattctaaatttctaatccttcactgtcata-tag-----------------------------------------------------------------------------------
       || ||||| ||||| ||||| ||||| ||||||||||||||||| |  || || || || ||||| ||  |||| ||  | || |  |||||           | | |  |   |  |  |  |      ||  | |  |||   || |   | ||     |||  |     |||   || ||     | ||   | ||||  |||                                                                                   
ATGTGCTCAACTTGTGTTTGCACCTATTGATGAGTCATTTGCTGATGATGCTCTGTTACTGCCATCTGGTTTTCGTGTCATTCCGTTGGATCCTAAATCAgttgagtttcatttctttgcgacttttatgattttcctagagcttggtcatgaaactactgttaattactttgcctgtaatttggaaatttggtactttagttctcatcctagtctccaaggttatgatagtataatccaattggcagataagaatctgttgtaatgtttcttatcccattacttttacatctcag

upper sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttattcttgacgcaatattcta-aatttctaatccttcactgtcatatag---
       ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| || || || |||||| |||||||  | || |  ||| |   |   | | | | |  | |    ||   |  | || |    |   | |  |  ||   |  | | || |  |    |  |  | ||| ||  |   |   
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagc-tctatacattgaatgctattaccattttggagaaaatgttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata