Sequence
atgc intronic sequence ATGC exonic sequenceCTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTGgtatgtctatggcttgttactcttatttcaataagagattgctttcccttgacttttttccttcataaaaatttgtatgtagtctcaaatttttatttttatttatttatcttgatgaaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G31060.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 14
CTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTGgtatgtctatggcttgttactcttatttcaa------taagag--attgctttcccttgacttttttccttcataa-aaatttgtatgtagtctcaaatt---tttattttta-------tttatttatcttgatgaaacag----------------------
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CATATGAAAAATTTCGAGGCCCGCTTGGCAATGTCAGGAAAGGAGTACTGgtatgtttgacggctgttgtccttacttaaaagtgcttaaaaataattaagttaccctaagctacttctcacatgatatacttctgtgcttcaaataattaagcttgttttgagtgcggttttatttcttgtggttacccaatgctgtttgcttaattgaacag
upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 14
CTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTGgtatgtctatggcttgttactcttatttcaataagagattgctttcccttgacttttttccttcataaaaatttgtatgtagtctcaaatttttatttttatttatttatcttgatgaaacag
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CTTATGCTAAGTTTCGAGGTCCTCTTGGAAATGTCAGGAAAGGAGTATTGgtatgccaaccattgacttccatttttctgataa-------tctaaactagaattagtt------------tttggttatc-tcttaatttttcatttt--tttattttgatgagtaaagca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116424469|gb|EG467061.1|EG467061EST: CTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTG GTTTCCATGGCACGTGGTACTATCACAGCTCATTCTCTGATGAGTTTGGAA
genomic: CTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTGgtatgtctat ... gatgaaacagGTTTCCATGGCACGTGGTACTATCACAGCTCATTCTCTGATGAGTTTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTATGAAAAGTACCGAGGTCCGCTTGGAAATGTTAGGAAAGGAGTATTGgtatgtctatggcttgttactcttatttcaataagagattgctttcccttgacttttttccttcataaaaatttgtatgtagtctcaaatttttatttttatttatttatcttgatgaaacag
- - - - - - - - - - - - - - - - - - - AAGGAG