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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGgtgagagattctttaaaactttctgatgaagtcatatatatatagcttaaatcgaagaaatacacggatctctgataatgatactgatgaaatcatatggtag

Basic information

species Arabidopsis thaliana
transcript AT2G28390.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA12G29450.2 (Glycine max), 5'ss of exon 13
CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGgtgagagattctttaaaactttctgatgaagtcatatatatatagcttaaatcgaagaaatacacggatctctgataatgatactgatgaaatcatatggtag
 ||| || |||||||| ||||| |||||||| || ||||| ||||||||||| |||||||||||||| |  | || |      |||  | ||      |    ||  ||  |||  | | | ||| ||  | |  | |     |  ||   |  | ||  | |   | 
TTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGgt-attgtttttgcttgccttcatcatttctcaaatcttaattattttatcttgtaaaaaaacgtgaacttataggctt--taactactatattttctatcac

upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G40080.2 (Glycine max), 5'ss of exon 13
-----------------------------------CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGgtgagagattctttaaaactttctgatgaagtcatatatatatagcttaaatcgaagaaatacac-ggatctctgataatgatactgatgaaatcatatggtag
                                    ||| || |||||||| ||||  |||||||| || ||||| ||||||||||| |||||||||||||| |    || |      |||  | ||      |     |  ||  |||  | | | ||| ||     || ||  |||  |    |||  |    || |  || 
ACTCTGATCAGACTTGTAATAATTTTATTTGGCAGTTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGgt-attttttttgcttgccttcattatttctcaaatctcaattattttatcttgcacaaaaacgttaaatgtcctata--ggctatgactactatattttcta-

upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G40080.1 (Glycine max), 5'ss of exon 14
CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGgtgagagattctttaaaactttctgatgaagtcatatatatatagcttaaatcgaagaaatacac-ggatctctgataatgatactgatgaaatcatatggtag
 ||| || |||||||| ||||  |||||||| || ||||| ||||||||||| |||||||||||||| |    || |      |||  | ||      |     |  ||  |||  | | | ||| ||     || ||  |||  |    |||  |    || |  || 
TTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGgt-attttttttgcttgccttcattatttctcaaatctcaattattttatcttgcacaaaaacgttaaatgtcctata--ggctatgactactatattttcta-

upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 13
CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGgtgagagattctttaaaactttctg-atgaagtcatatatatatagcttaaatcgaagaaatacacggatctctgataatgatactgatgaaatcatatggtag
 ||| || || ||||| || || || |||||||| |||||||||||||||||||||||||| |||||  ||    ||  |      |||  ||  |   || |    |||  ||| ||| || |  |    |    ||  ||||   |  |  |   |   |||  |  
TTCTCCTCTGCTGGGTTACCCCGGAGTTTGAACTTTATGCAGCATTTGATCCACTTGCAGATAAGgtatgattccctccatcctcctctacatctaacaattttctcatatattacatcaaatatct---tgtgattcgcataagagtttttgttggactttatcatc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087938|gb|DR383697.1|DR383697
EST:     TCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAG                         GCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTG
genomic: TCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAGgtgagagatt ... catatggtagGCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTG