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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTAGTCCGATATTTTTCCTAGATGCATATACCACTTTGATAGTCTTCTACTCATCAACAGCAGACCCGTCAATACCTTTCCCTCCACCTCAAGACTgtaagttttctcaccaaatgaaatccagttcaaccacctttagatctttgagactatgttgattcgaaaacttatatcttacag

Basic information

species Arabidopsis thaliana
transcript AT2G27460.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27460.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA11G18930.1 (Glycine max), 5'ss of exon 13
AGTGGTAGTCCGATATTTTTCCTAGATGCATATACCACTTTGATAGTCTTCTACTCATCAACAGCAGACCCGTCAATACCTTTCCCTCCACCTCAAGACTgtaagttttctcaccaaatgaaatccagttcaaccacctttagatctttgagactatgtt--gattcgaaaacttatatctta-cag
||||| ||||||||||||||||| |||||||  || | | ||||||| || || || || |||||||||||| |  | ||||| |||||||| || || ||||||  ||||       |    ||       ||  | || |       |    | ||     | |  |      ||| |||  |||
AGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATTCTGATAGTGTTTTATTCTTCGACAGCAGACCCGACGCTTCCTTTTCCTCCACCCCATGATTgtaagccttctttttttttaccttctgtcctcactgcattaaacataacgtttttctgcctaaactttatgcaaaataccttgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124916217|gb|EH990091.1|EH990091
EST:     TCAACAGCAGACCCGTCAATACCTTTCCCTCCACCTCAAGACT                         GTTTATTGAGGCAGACCATAAATAAAGTGAAGCAAGAAAGGAG
genomic: TCAACAGCAGACCCGTCAATACCTTTCCCTCCACCTCAAGACTgtaagttttc ... tatcttacagGTTTATTGAGGCAGACCATAAATAAAGTGAAGCAAGAAAGGAG
EST: gi|125212015|gb|EL226969.1|EL226969
EST:     ACCCGTCAATACCTTTCCCTCCACCTCAAGACT                         GTTTATTGAGGCAGACCATAAATAAAGTGAAGCAAGAAAGGAGCATCACAC
genomic: ACCCGTCAATACCTTTCCCTCCACCTCAAGACTgtaagttttc ... tatcttacagGTTTATTGAGGCAGACCATAAATAAAGTGAAGCAAGAAAGGAGCATCACAC