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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGgtaaatacttagccttgttaactaaatatctatgatctgcaatcaaatgattaaacatgaaatggctaaatttcctcctcttttttatgttaatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G23380.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23380.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os06g16390.1 (Oryza sativa), 5'ss of exon 13
TGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGgtaaatacttagccttgttaactaaatatctatgat-ctgcaatcaaatgattaaa-catgaaatggctaaatttcctcctctttttta---tgttaatttcag
  | || |||||| |  | || ||||| | ||||||||| ||||||||||| ||| |||| |||||| |||| || ||||| ||||||||||||||   || ||  | || | |   |||  ||| |  ||||      | || |   | | ||     |  ||||  |   | |  ||      |  ||||   
GTGCGGTGATGGTACATTGGGAGTCCCTAACCAAAGAGGTGATAATTATGAATGCCGGAACATGAAACTGCTGCTTAAACAGCAACAAAGGgtaaaccttttgcact-ttgatt---tattcatgctattgcaccttggttataatttcgtcaagcctatcgattttttatgcctgcttggcccttccatttgcc

upper sequence: AT2G23380.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G157820_T02 (Zea mays), 5'ss of exon 13
TGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGgtaa-atacttagccttgttaactaaatatctatgatctgcaatcaaatgattaaaca-tgaaatggctaaat--ttcctcctcttttttatgttaatttcag
  |||| |||||| |  | || || |||| ||| ||||| ||||||||||| ||| |||| |||||| |||| || ||||||||||||||||||| |  ||| || ||| ||| || |   ||   ||  |||      | || |  || ||||   | ||| |  ||  ||    ||  |   | |||| |  
GTGTGGTGATGGTACATTGGGAGTTCCAAACCAGAGAGGAGATAATTATGAATGCCGGAACATGAAACTGCTTCTTAAACAACAACAAAGGgtaacaagctttgctttgataa-tataccactgctattggcatgttgcttataatccagtgaagacgataactgatttatctatattgatccctcaattcc--

upper sequence: AT2G23380.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 11
TGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAATTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGgtaaatacttagc--cttgttaactaaatatctatgatctgcaatcaaatgattaaacatgaaatggctaaatttcctcctcttttttatgttaatttcag
| |||| |||||| | ||||| || |||||||||||||| ||||||||||| || || ||||||||  | || || ||||| |||||||||||||  |  | |   ||| ||   | |||  | |  || ||| |     | |  ||   |   |    |   |     |     |     | |  | ||| 
TTGTGGTGATGGTACTCTTGGTGTACCAAGCCAAAGAGGTGATAATTATGAATGTAGAAATATGAAGCTTCTTCTCAAACAGCAACAAAGGgtaataatctggttacttattgttttaatgacaaatat-tgccaagtgttcaccaattctagcacatgtttgtgggggctggggtggggagatgttctcaa