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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAAACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGATGTTCCTTCTTCGCCTCTTGTCGGTATCGTTCAGgtaaaatatcccttcctaacatctccaatcctggaaagagaaaatagaaccttcgaaaccaaaatgctacattgtttacacgcag

Basic information

species Arabidopsis thaliana
transcript AT2G22730.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22730.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 12
TGTGAAACCAAGTTTACGACCATTATCAATGGCTATATCCACCGTCGCAATTCACATATTCGGCGATGTTCCTTCTTCGCCTCTTGTCGGTATCGTTCAGgtaaaat-atcccttcctaacatctccaatcctggaaaga-gaaaatagaaccttcgaaaccaaaatgctacattgtttacacgcag----------------
||| ||||||||||| || ||||||||||||||||| || || || ||||| || ||||| || ||||| |||||||| |||||||| ||  |  |||||||||  |  |   |   |     | | ||   || ||    ||| || |||   | |    | || |||   |||    |     |                 
TGTAAAACCAAGTTTGCGGCCATTATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGgtaatgttgtttgtgtttgttcacactaaatttgtaattttgaatattgaataattg---tctaattgccgaatttcccatgaataaatccatttgttcattt