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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCCgtaaggcactagcatattccattgattgaatcatctggttaatcttattttatgttttgcaaatttctcttgatgtgcaagaatggttctgtag

Basic information

species Arabidopsis thaliana
transcript AT2G07050.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07050.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 5'ss of exon 14
CTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCCgtaaggcactagcatattccattgattgaatcatctggttaatcttattttatgttttgcaaatttctc-ttgatgtgcaa---gaatggttctgtag
 ||||||| || || ||||| |||||||| ||||||||||||||||||||||  | | |||  ||  ||| ||      || ||   ||| || |||| | || ||||| ||| |  || || |  ||     |||  | |||||
TTAATCAATCCTGCTGAAACTTTTGGCGACATTGTTATTGATTATCCgtaagatattggcac-tttgattaat---gctatttg--caatattcttttgt-ttatgcaactttatagtttatctctaactaatatgactatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125240741|gb|EL254826.1|EL254826
EST:     CTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCC                         TTACGTGGAATGTACATCAGCTGCTATC
genomic: CTAATCAACCCAGCAGAAACCTTTGGCGATATTGTTATTGATTATCCgtaaggcact ... ggttctgtagTTACGTGGAATGTACATCAGCTGCTATC