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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATGCTCAAGAAAACCATTACTAAAAGGGCTCTAAAAGCTTCTGGTCAGACTGATCTATCTGGGAATGCTTCCAAGGATCTGCTTCTAATGCATAGAgtaatattttctttctatgaatattgcttcctttttgtatatatttttttctcatttgttttgtttttcttgttaatcatattcacctgttttaccgattcccag

Basic information

species Arabidopsis thaliana
transcript AT1G79000.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 11
AGGAATGCTCAAGAAAACCATTACTAAAAGGGCTCTAAAAGCTTCTGGTCAGACTGATCTATCTGGGAATGCTTCCAAGGATCTGCTTCTAATGCATAGAgtaatattttctttctatgaatattgcttcctttttgtatatatttttttctcatttgttttgtttttcttgttaatca-tattcacctgttttaccgattcccag
|||||    ||| || || || || |||||||||||||| || || |||||  ||||||| ||||| |||||||| |||||| | || |||||||||| ||||||  |    ||  |   |  || |  |  || || || | | ||| ||  | |  |||||  | |    |  || | |    | |   |   || |||     
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttca--gaccttccagc--ttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116421535|gb|EG464127.1|EG464127
EST:     AGACTGATCTATCTGGGAATGTTTCCAAGGATCTGCTTCTAATGCATAGA                         CTCGGTGAGACCATTCACCCGATGAAGGAGGACTTTATCATGGTCCACTTG
genomic: AGACTGATCTATCTGGGAATGCTTCCAAGGATCTGCTTCTAATGCATAGAgtaatatttt ... cgattcccagCTCGGTGAGACCATTCACCCGATGAAGGAGGACTTTATCATGGTCCACTTG