1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACCACACTTGTTGCTAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttcaggcacacagatttaatagttattgatgaatcccattgcctatgctcattttttttttttttttttaatgtgaattccag
species | Arabidopsis thaliana |
transcript | AT1G78900.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAG GAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTAEST: gi|116463760|gb|EG506352.1|EG506352
genomic: CTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttca ... tgaattccagGAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTA
EST: TAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAG GAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTATGAEST: gi|116463788|gb|EG506380.1|EG506380
genomic: TAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttca ... tgaattccagGAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTATGA
EST: TAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAG GAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTATGAEST: gi|125096720|gb|EL153421.1|EL153421
genomic: TAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttca ... tgaattccagGAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTATGA
EST: TAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAG GAATCACAATCGCTGAATAEST: gi|124918837|gb|EH992638.1|EH992638
genomic: TAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttca ... tgaattccagGAATCACAATCGCTGAATA
EST: ACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAG GAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTA
genomic: ACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttca ... tgaattccagGAATCACAATCGCTGAATATTTTAGAGATATGGGCTACAATGTTAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACCACACTTGTTGCTAACACCTCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGgtaatgttcaggcacacagatttaatagttattgatgaatcccattgcctatgctcattttttttttttttttttaatgtgaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC