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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccagcaacggtctcctgcaaatcagtgtcattgtcatgccaaaactaagattgttcacatgcttctatattggaatccttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G73720.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os01g21940.1 (Oryza sativa), 5'ss of exon 12
TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccag---caacggtc--tcctgcaaatcagtgtcattgtcatgccaaaactaagattgttcacatgcttctatattggaatccttttgcag---
|||| | || |||||| | || || |  || || || |  || |||||| |||||||||| |||||||| || |||||||| ||||| || |||||||||||| | |   |      ||  ||  || |   | | |  ||  |  |  ||   ||| |     ||| ||    | | ||  ||  | | |||   |||   
TGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGACAGgtataatgtgattcttcacattccatcgtcttagttatcgttttctttgtgttcaaaattcaggtgtccatcgccatgtacttt--acttcttcctcagcag

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 13
TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccagcaacggtctcctgcaaatcagt---gtcattgtcatgccaaaactaagattgttcacatgct-tctatattggaatccttttgcag--
||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||||||| |  |  |  |  ||    ||| || | | |    | ||  | ||  ||  | |    || |     |  | |  || |||| ||  | || |    
TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtatacataaacgagtggatgactggaagttattttgtttatacttatttcattagtgtctttatattagtattatggatgttggcattgtctttcttaa

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 13
TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccagcaacggtctcctgcaaatcagtgtcattgtcatgccaaaactaagat--tgttcacatgcttct--atattggaatccttttgcag--
||| || ||||| ||| ||||| | |||||||| || || || ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||||||| |     |  |  ||    ||| || | | | |  ||||  |     || ||   |  || |   |   || |  || |||  ||  | || ||   
TGCTTCTGTCAATTCTGTTCACATTTTCCCCAAGAATACTGATCACATTGTTGTTTGTAACAAAACGTCATCCATATATATCATGACACTTCAAGGACAGgtataccgaaaatagtggatgactggaagttattttgtttgtatttatttaattagtgtcttgatattagtattatggatgttgccattgtctttcataa

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 13
TGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGAACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGgtaaatttccagcaacggtctcctgcaaatcagtgtcat-tgtcatgccaaaactaagattgttcacatgcttctatatt-ggaatccttttgcag-------
 ||||| || ||     ||||  | ||||||||||| ||||| || ||| ||||||| |||| ||||||||| |||||| |||||||||| ||||||||||||  | | |     |    |  || |||  || || |  |  ||  | |    | |  ||  ||   ||  |  | | | ||||        | |       
CGCATCTGTAAATGGCGTTCATCTTTTCCCCAAAAATACAGACCATATTATTGTGTGTAACAGGACATCATCAATATACCTTATGACACTTCAAGGACAGgtacttattctttttc---tttgtggaaactagggtgagatagcacactatttgttattttagtctgttgtatagacaataggaaataaccaactgatgaggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164181677|gb|ES129929.1|ES129929
EST:     TCTATATACATTATGACACTCCAAGGACAG                         GTTGTGAAGAGTTTCTCATCCGGTAATAGGGAAGGAGGAGATTT-GTAGCA
genomic: TCTATATACATTATGACACTCCAAGGACAGgtaaatttcc ... ccttttgcagGTTGTGAAGAGTTTCTCATCCGGTAATAGGGAAGGAGGAGATTTTGTAGCA